PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G086600.1.p

Common Name

Sb03g007270, SORBIDRAFT_03g007270

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

LBD

Protein Properties

Length: 298aa MW: 31840.7 Da PI: 6.835

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G086600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.6	6.1e-31	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C++C+vlr++C+++C+++p++ p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg++++++ Sobic.003G086600.1.p 4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQGNATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGN 92 6***********************99********************************************************* PP DUF260 85 qqleqlkaelallk 98 +ql+q+++e +l++ Sobic.003G086600.1.p 93 WQLCQAAVESVLRG 106 *****9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	4.6E-90	1	293	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.728	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.0E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQGNATVF LAKFYGRAGL INLITAGPEH 60 VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQAAV ESVLRGMPIA QPPPLAATAV 120 PPLRSCDIRH VSRREAAGRG AGAGAVDAAG PGGLHRMANS SRGQFKRSGA HRSGDSGIEL 180 VFSQPPSASS MLVDIRQAQP LNWAPRQPSH EYSASHDDDG GAVRESDSNA SVDTVDVSHV 240 SQSEPAEPPR ESHDERAAED GLDLTLGLPL AHKVEPSDVD DDQPCHRGGE PMKNWAW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G086600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100502	1e-123	FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457436.1	0.0	LOB domain-containing protein 42
TrEMBL	C5XQW1	0.0	C5XQW1_SORBI; Uncharacterized protein
STRING	Sb03g007270.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	4e-68	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Sobic.003G086600.1.p
Entrez Gene	8073359