PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G076500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 32470.4 Da PI: 9.3471 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 9e-10 | 30 | 74 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 WT+eE +++ a + l +W+++a+ ++ gRt +++s++ ++ Sobic.003G076500.1.p 30 WTAEENKRFESALAGLDLChpDWEKVAQAIP-GRTVREVVSHFKNL 74 ****************99999**********.***********997 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.6e-15 | 141 | 185 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky Sobic.003G076500.1.p 141 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 185 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.715 | 25 | 79 | IPR017884 | SANT domain |
SMART | SM00717 | 6.6E-4 | 26 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-4 | 28 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.15E-8 | 29 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.49E-7 | 30 | 74 | No hit | No description |
Pfam | PF00249 | 2.8E-7 | 30 | 74 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.359 | 134 | 190 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.21E-18 | 135 | 190 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.7E-17 | 137 | 188 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.4E-13 | 138 | 188 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-12 | 138 | 184 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.56E-12 | 141 | 186 | No hit | No description |
Pfam | PF00249 | 9.8E-13 | 141 | 185 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MMREMYMDVL PPVDHIAARS NWFPAAARLW TAEENKRFES ALAGLDLCHP DWEKVAQAIP 60 GRTVREVVSH FKNLQLDVQQ IESGQVPLPV YGSGASSFTL QWDGNGGYGP GDFRHGYRFG 120 GGCGKRHHGR TPEQERKKGV PWTEEEHKLF LLGLKKYGKG DWRNISRNFV QTRTPTQVAS 180 HAQKYFIRLN SGGKDKRRSS IHDITTVNLT DEQPPSPSQS SLITNQSNAS APTAGIGQFS 240 LAADAKQHGS GNLPFNSPSR TSVMAAYRMD LQDQGLQCGP LHDQLVASQS ILF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.7738 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G076500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956859 | 0.0 | EU956859.1 Zea mays clone 1575939 MYB-like transcription factor DIVARICATA mRNA, complete cds. | |||
GenBank | EU969953 | 0.0 | EU969953.1 Zea mays clone 337779 MYB-like transcription factor DIVARICATA mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455217.2 | 0.0 | transcription factor DIVARICATA | ||||
Refseq | XP_021312949.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 2e-79 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1B6Q1W4 | 0.0 | A0A1B6Q1W4_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G079458_P04 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7886 | 33 | 48 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 4e-67 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G076500.1.p |
Publications ? help Back to Top | |||
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