PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G076400.1.p | ||||||||
Common Name | Sb03g006430, SORBIDRAFT_03g006430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 258aa MW: 28803.5 Da PI: 9.4771 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.2e-05 | 227 | 250 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ C+ +Fs++ ++++H+++ H Sobic.003G076400.1.p 227 YTCKLCSAVFSSQQMYHSHMSLlH 250 9*******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.954 | 227 | 251 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 229 | 250 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MERNSYPTKD TRFRQSDNEI SPLHEALRGK TTMPTLSSSE PNDHAHSFKS YYNNSEAIPH 60 QLHSVSTPIP PTSIIASTRL EQSLKKEQEL MRMFLTTPVS EDARRKALSL EPQSIKSLLQ 120 GDPMAILQAH FDIAGVSDPG PIFHDPALHV PKERMHKTLG SSSSSHDDLY GKIPYAKPTF 180 FNQPPVSSLV QREQHVPSGF PSSNSYDAIK EVMGSTINFR RVKKQKYTCK LCSAVFSSQQ 240 MYHSHMSLLH SKGIGNN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G076400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457384.2 | 1e-166 | uncharacterized protein LOC8060818 | ||||
TrEMBL | A0A1W0VW35 | 0.0 | A0A1W0VW35_SORBI; Uncharacterized protein | ||||
STRING | Sb03g006430.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19398 | 6 | 9 | Representative plant | OGRP19637 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G076400.1.p |
Entrez Gene | 8060818 |