PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G073700.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MIKC_MADS
Protein Properties Length: 172aa    MW: 19302.5 Da    PI: 9.7385
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G073700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.17.4e-261463251
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          rie+   rqv fskRr g++KKA+ELS LCdaeva+++fs+ gklyey+s
  Sobic.003G073700.2.p 14 RIEDRVSRQVRFSKRRSGLFKKAFELSLLCDAEVALLVFSPAGKLYEYAS 63
                          8***********************************************86 PP
2K-box181.2e-071221514978
                 K-box  49 keLqqLeqqLekslkkiRskKnellleqie 78 
                             Lq+Le+ L ++lk  Rs+K+++l +q +
  Sobic.003G073700.2.p 122 DGLQKLENLLRNALKDTRSRKMNMLAKQNS 151
                           679***********************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-31564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.254565IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-30784IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-27727IPR002100Transcription factor, MADS-box
PfamPF003195.6E-251461IPR002100Transcription factor, MADS-box
CDDcd002652.12E-331581No hitNo description
PRINTSPR004041.0E-272742IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-274263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MAAARRRGRV ELRRIEDRVS RQVRFSKRRS GLFKKAFELS LLCDAEVALL VFSPAGKLYE  60
YASASIEDTY NRYQQFSGEG RNMNDDRNKN NNKDEASSDL QLMLREIAAW SPQSNDDESD  120
VDGLQKLENL LRNALKDTRS RKMNMLAKQN SGASTSGQKS EGVTSQEQGT A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-18777373MEF2 CHIMERA
6byy_B2e-18777373MEF2 CHIMERA
6byy_C2e-18777373MEF2 CHIMERA
6byy_D2e-18777373MEF2 CHIMERA
6bz1_A3e-18777373MEF2 CHIMERA
6bz1_B3e-18777373MEF2 CHIMERA
6bz1_C3e-18777373MEF2 CHIMERA
6bz1_D3e-18777373MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.96081e-78leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10382970}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G073700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848192e-89KF184819.1 Saccharum hybrid cultivar R570 clone BAC 004J16 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310997.11e-122MADS-box transcription factor 51 isoform X2
SwissprotQ9XJ611e-65MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A1W0VW121e-120A0A1W0VW12_SORBI; Uncharacterized protein
STRINGPavir.J02739.1.p4e-73(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.16e-25AGAMOUS-like 20
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]