PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G061400.2.p | ||||||||
Common Name | Sb03g005250, SORBIDRAFT_03g005250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 26212 Da PI: 10.6756 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.1 | 2.1e-10 | 54 | 98 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN +++Lr+++P + ++Ka+ L ++ve +k L Sobic.003G061400.2.p 54 HSEAERRRRERINAHLATLRRMIPDT-----RQMDKATLLARVVEQVKLL 98 9************************8.....68*******9999987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.85E-13 | 40 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.443 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-12 | 53 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-8 | 54 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.2E-10 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.9E-4 | 138 | 180 | No hit | No description |
CDD | cd04873 | 1.39E-5 | 138 | 209 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAACQPLQGK ELQPVLLPRQ ASSAPRAVRV APPEMSSSSG SGRSTTEARA LKIHSEAERR 60 RRERINAHLA TLRRMIPDTR QMDKATLLAR VVEQVKLLKR NASEATTQSV PLPPETDEVS 120 IELHTGAGAD KVIYIKASIS CDDRPDLVAG LAQAFHGLRL RTVRADMTSL GGRVQHVFVL 180 CKEEGWGGAG VGAASASLRS LKEAVRQALA RVASPETAYG SSSPFQSKRQ RILESHYSIM 240 SI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 62 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G061400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064087 | 0.0 | BT064087.1 Zea mays full-length cDNA clone ZM_BFc0137C17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457305.1 | 1e-175 | transcription factor bHLH51 | ||||
Refseq | XP_021311070.1 | 1e-175 | transcription factor bHLH51 | ||||
Refseq | XP_021311071.1 | 1e-175 | transcription factor bHLH51 | ||||
TrEMBL | C5XP74 | 1e-174 | C5XP74_SORBI; Uncharacterized protein | ||||
STRING | Sb03g005250.1 | 1e-175 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 9e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G061400.2.p |
Entrez Gene | 8075119 |