PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G058200.1.p
Common NameSb03g004980, SORBIDRAFT_03g004980
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 263aa    MW: 28641.9 Da    PI: 5.4653
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G058200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-1981131155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           + y+GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa a+++a+k+++g
  Sobic.003G058200.1.p  81 CVYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGSFPTAVEAAHAYDEAAKAMYG 131
                           68*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-1481131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-3182140IPR001471AP2/ERF domain
SMARTSM003806.1E-3482145IPR001471AP2/ERF domain
PROSITE profilePS5103221.73382139IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2182140IPR016177DNA-binding domain
PRINTSPR003674.1E-98394IPR001471AP2/ERF domain
CDDcd000181.36E-2883141No hitNo description
PRINTSPR003674.1E-9105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MELGDATAGQ GAQGDAASGA LVRKKRMRRK STGPDSIAET IKWWKEQNQK LQDESGSRKA  60
PAKGSKKGCM TGKGGPENVN CVYRGVRQRT WGKWVAEIRE PNRGRRLWLG SFPTAVEAAH  120
AYDEAAKAMY GPKARVNFSD NSADANSGCT SALSLLASSV PVATLQRSDE KVETEVESVE  180
TEVHEVKTEG NDDLGSVHVA CKTVDVIQSE KSVLHKAGEV SYDYFNVEEV VEMIIIELNA  240
DKKIEAHEEY HDGDDGFSLF AY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1583138359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.138270.0callus
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G058200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2510160.0EU251016.1 Sorghum bicolor desiccation responisve element-binding protein (Dreb2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457289.10.0dehydration-responsive element-binding protein 2A isoform X1
SwissprotA2WL191e-127DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLC5XNL00.0C5XNL0_SORBI; Uncharacterized protein
STRINGSb03g004980.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-33ERF family protein