PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G040800.1.p
Common NameSb03g003640, SORBIDRAFT_03g003640
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 296aa    MW: 30739.2 Da    PI: 10.2302
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G040800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.83.8e-32217275159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Sobic.003G040800.1.p 217 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 275
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-33202275IPR003657WRKY domain
SuperFamilySSF1182901.83E-28209276IPR003657WRKY domain
PROSITE profilePS5081129.356212277IPR003657WRKY domain
SMARTSM007749.8E-37217276IPR003657WRKY domain
PfamPF031065.3E-25218274IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MFPSPGRTVM ALGHGGQHMT SSSTAGAAGG MAAASSSSTP TITFAFQPSP PPTSGLALAH  60
HGVLGYGSSS LLLDHHHHPT TTTTSSAASS SHAASSITLH HHLHGHAAAA APHASLSPPT  120
RASPPPHPWS TTTTACEEAG GPAPAHDRQA GQQGGRPPRG KGAAAVISEG SAAAALGVGA  180
VRMKKAGGGG GGGGGKARRK VREPRFCFKT MSDVDVLDDG YKWRKYGQKV VKNTQHPRSY  240
YRCTQDNCRV KKRVERLAED PRMVITTYEG RHVHSPSRDD DDDAARANAE MSFIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-25208274874Probable WRKY transcription factor 4
2lex_A2e-25208274874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G040800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369000.0BT036900.1 Zea mays full-length cDNA clone ZM_BFb0146L21 mRNA, complete cds.
GenBankEU9636460.0EU963646.1 Zea mays clone 265112 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455053.20.0probable WRKY transcription factor 12
TrEMBLA0A1W0VVM20.0A0A1W0VVM2_SORBI; Uncharacterized protein
STRINGSb03g003640.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.13e-47WRKY DNA-binding protein 13