PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.003G040500.1.p | ||||||||
Common Name | Sb03g003610, SORBIDRAFT_03g003610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 218aa MW: 22949.4 Da PI: 4.2961 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 45.8 | 1.4e-14 | 95 | 177 | 19 | 100 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflvdivprde 100 +lP+ r+k+i+++d d++++++ea l++ a elf+ l+ + a +rt++ + aa ++ + dfl+d +e Sobic.003G040500.1.p 95 PALPVGRVKRIMRVDRDINKVTSEATLLIAAATELFLGSLATGAHTAAARRGKRTVRAVHVRAAArAHRPTADFLLDCLAAEE 177 579**********************************************************88761566799*****987765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.4E-18 | 95 | 158 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.2E-16 | 95 | 173 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-13 | 97 | 158 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MAAATADEPT VPMEEQPGKE SEEAAEAMEE QLEKESEEAA EAMEEQLGKE SEEATESAEA 60 MEQIEEEPEE GGDPAEAMEK DGEEAEAEEG ASLRPALPVG RVKRIMRVDR DINKVTSEAT 120 LLIAAATELF LGSLATGAHT AAARRGKRTV RAVHVRAAAR AHRPTADFLL DCLAAEEEAP 180 RVRKAAGSAG GGGGGGGEAK PLPRGTRRID AFFQKVT* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.003G040500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ726958 | 0.0 | KJ726958.1 Zea mays clone pUT3656 CCAAT-HAP5 transcription factor (CA5P15) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457226.1 | 1e-147 | nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | C5XMM7 | 1e-145 | C5XMM7_SORBI; Uncharacterized protein | ||||
STRING | Sb03g003610.1 | 1e-146 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13342 | 26 | 28 | Representative plant | OGRP9472 | 12 | 13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.003G040500.1.p |
Entrez Gene | 8084383 |