PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G037500.1.p
Common NameSb03g003370, SORBIDRAFT_03g003370
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 549aa    MW: 56139.4 Da    PI: 7.6596
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G037500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-29287345259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed++++++tYeg Hnh+
  Sobic.003G037500.1.p 287 PDGCQWRKYGQKISKGNPCPRAYYRCTVAaHCPVRKQVQRCAEDTSILITTYEGAHNHP 345
                           69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30271345IPR003657WRKY domain
SuperFamilySSF1182904.97E-26279346IPR003657WRKY domain
PROSITE profilePS5081126.946281347IPR003657WRKY domain
SMARTSM007741.5E-34286346IPR003657WRKY domain
PfamPF031061.6E-25288345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MEVAVERPPP APQVKAEEKR PDAKPEIAAR PPMVGSALPI VFESFPSTQR DAAGGINVKQ  60
EERRLEAARA EMGEVREENE RLKSMLSRIV SQYQSLQMHF LDVVKVQEQA SSAAKVAEKK  120
LPVAPAPAPN PGTDDDGPDD LVSLSLGTRA NSGGAPRRKG HERSSSSSGT AETTTAADAD  180
DQGHHQLSLG LGFARGNGLP SSTTTATDDD KASHASTAPV LNLTSDSSGS ADDNDDAKPA  240
LAAAGTARKS PSAGAGAGDR SADDEVQQQA KKARVSVRVK CDTPTMPDGC QWRKYGQKIS  300
KGNPCPRAYY RCTVAAHCPV RKQVQRCAED TSILITTYEG AHNHPLTPAA TAMASTTSAA  360
VAMLTSGSTT SAASASLVHG HGHPLPAAAG LFGPTTMVST AASCPTITLD LTSPAAPHSL  420
MHSSPYAAAA AAAAAAGFES KAFPAAWSNG YLAYGGAHPS YYSKSSTSPA LGHLFGGSLG  480
VPSRPEQLYA QSYLQRASSL GGGHGAVAPA AVTDTLAKAI TSDPSFQSAL AAAITSVMGR  540
GGAAAAQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-192863461776Probable WRKY transcription factor 4
2lex_A7e-192863461776Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270279KKARVSVRVK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.82250.0embryo| root| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G037500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9663570.0EU966357.1 Zea mays clone 293867 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457211.10.0probable WRKY transcription factor 72
TrEMBLC5XM160.0C5XM16_SORBI; Uncharacterized protein
STRINGSb03g003370.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-46WRKY DNA-binding protein 72