PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G037400.1.p | ||||||||
Common Name | Sb03g003360, SORBIDRAFT_03g003360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 261aa MW: 26656.4 Da PI: 6.492 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.3 | 2e-30 | 137 | 195 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K vk+s++pr+YYrC+s+gC vkk+ver+++dp++v++tY g Hnh Sobic.003G037400.1.p 137 LDDGFKWRKYGKKAVKSSPNPRNYYRCSSEGCGVKKRVERDSDDPRYVITTYDGVHNHA 195 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-32 | 125 | 197 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-27 | 129 | 197 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.374 | 132 | 197 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.1E-35 | 137 | 196 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-24 | 138 | 194 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAASLGLAHD ASCYAAYPPA AAAASSYFPS PPPPGDLVAE FPPTAAATAM ADDYYYYYFQ 60 FGEEMGGARA PGCGGGYCSP PAPAFDNGMS LLSYGGVDGD GRRPMSGPAA GTGGNGGGGR 120 PPASRIGFRT RSEVDVLDDG FKWRKYGKKA VKSSPNPRNY YRCSSEGCGV KKRVERDSDD 180 PRYVITTYDG VHNHAAPGAA YLCPPPPRGA TATAAAPCFS SPCSGSASAA LVAAPSWSGA 240 FDAWEAQLAA AAAHSSESSY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-27 | 127 | 197 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-27 | 127 | 197 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.19080 | 0.0 | shoot |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G037400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455037.1 | 0.0 | probable WRKY transcription factor 50 isoform X1 | ||||
TrEMBL | C5XM15 | 0.0 | C5XM15_SORBI; Uncharacterized protein | ||||
STRING | Sb03g003360.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 5e-38 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G037400.1.p |
Entrez Gene | 8078744 |