PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G033000.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 1024aa    MW: 113574 Da    PI: 8.8096
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G033000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-10203245347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +W+++E + +++a +q+G++ Wk+I+  +g g++  +++s + ++
  Sobic.003G033000.2.p 203 KWSKDELKNFYEAYRQHGKD-WKKISIAVG-GKSSDMVRSLYTSH 245
                           8*****************99.*********.********977665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.968199256IPR017884SANT domain
SMARTSM007173.2E-5200248IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-9201247IPR009057Homeodomain-like
PfamPF002494.5E-9203244IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-4203245IPR009057Homeodomain-like
CDDcd001673.05E-6203240No hitNo description
PfamPF065845.5E-31643743IPR033471DIRP domain
SMARTSM011357.5E-37643744IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1024 aa     Download sequence    Send to blast
MRRVPLPELP LPPTLIFKRA NSRMAHLSVP PPTFASLLPP VSSSLPLPFF STCIPRPPSR  60
GRSAAETQTG HPTRTRRPIS SAPVLSDPST PPEPAPEQHL LATGPQASAG VDAWFRLCGG  120
GARRERGSGV REAPSRARFR PDPTQQYLSS LKSRTVLMGP AKGSRTINKT IVKGYEDQQH  180
HDDPSSSSKA KQKKKKISDL DPKWSKDELK NFYEAYRQHG KDWKKISIAV GGKSSDMVRS  240
LYTSHRTFLS LPEREATAMG FIALVTGHHN ASEKTTSHRG YDHIVRASGK ARKHGEQQKS  300
IDGPDPHNCH EGKISGFSAS FKKRYYGELV RNSRNHAVWR RTPRIPVIAP ADRSTIDDAT  360
PGIENVINST KRKYEAANYD CSIVPTNEYS PDRVSGFAEA NKVGLDFKKT RIQQTMAEGQ  420
TGIVEHEMTM ASKEGNKLVD SLNNNQMLID SISEDDMLVL DVLNSLVNAP SKMSKLEINI  480
PSGSLGKTDS ALSHRREEDH PIIDVSKQRK PVGKSSTSKT RKKKHKKILD AEVPAEAQNI  540
CGNNLVLPET LRVGITDDSS LCTDSGRVGI PEASEDISAE VPNAQMETKP EVRMSGRTRR  600
KSQLHCKTKH MSCNEGSDNL QAKKLLHCLS SEPLRRWCTY EWFYSAVDYP WFSNNEFVHY  660
LDHAKLSHLS KLTRSEWSAI RSSLGKPRRF SNNFLAVEKE KLEDYREQVR KIYAQLSDGS  720
RDSLPADLAR PFSIGQQVIV RHPNSRELCD GKVVKLGPDC YKVHFDDPDL GVDIVKDTDC  780
MPVNWLYNRP DNMRRVYLSN NAYSILEMDH IPDLTPSENG DHAVNGATVL EGLRSLRLTS  840
DIQPKAESIV NNERPPYMST SDGPTKSRDC PGHNDELESF VAAFVERSLS QARQMFDEEM  900
QANSGSRDDE KSCMSNQATG CVGPGSESAR GTQLPSDLIS NCVATALSIK RLSDSWHEFD  960
SITGVLDHAL SMLRPSCPEN LALYKQIERD IGILMSQIFA RVPTALGNCS PPVSPHVTGP  1020
WAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G033000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457191.20.0protein ALWAYS EARLY 3 isoform X2
TrEMBLA0A1B6Q1310.0A0A1B6Q131_SORBI; Uncharacterized protein
STRINGSb03g003005.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.29e-64DNA binding