PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G031800.1.p
Common NameSb03g002960, SORBIDRAFT_03g002960
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 499aa    MW: 52676.6 Da    PI: 8.8053
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G031800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-0680102123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C+ Cgk F r  nL+ H r H
  Sobic.003G031800.1.p  80 YVCEVCGKGFQRDQNLQLHRRGH 102
                           9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.78E-779102No hitNo description
SMARTSM003550.008180102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.82280102IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-680102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM0035538122152IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.78E-7152177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MMLKDLAAIQ QHQHHQQLQL AAAADENMSN LTSASGDQAS VSSHPAPPPA KKKRSLPGNP  60
DPDAEVIALS PRTLMATNRY VCEVCGKGFQ RDQNLQLHRR GHNLPWKLKQ RNPKEVVRKK  120
VYVCPEPGCV HHDPARALGD LTGIKKHFSR KHGEKKWKCD RCAKRYAVHS DWKAHSKVCG  180
TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESARAVTAAA AVVAGQQHHP GMLFSQAGGG  240
GGDGSAGLHL PPGVLDPSQT LGGGHGMSLQ ELCLKREQQQ QQQFAPSSWL TAHRQQELEL  300
PGAGNSAVFG SARPLDQQDY MGSSTHESTA GLSGFVGFSS PSAAGGGAAS AHMSATALLQ  360
KAAQMGATLS RPSNQGQMAS THSTTTTTNA GTGAANAAAA SNVPGTGAGA LGFGAPHHFG  420
AEERTTRPDH RDAGNGGNAA TGGGNEGLTR DFLGLRAFSH GDILSMAGFD PCMSSASSAA  480
YEQGHHHHHH QSSKQWHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-33153214364Zinc finger protein JACKDAW
5b3h_F7e-33153214364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106119KLKQRNPKEVVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G031800.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509710.0AK250971.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457187.10.0protein indeterminate-domain 7
TrEMBLC5XLW50.0C5XLW5_SORBI; Uncharacterized protein
STRINGSb03g002960.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-105indeterminate(ID)-domain 7