PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G025500.1.p

Common Name

Sb03g002440, SORBIDRAFT_03g002440

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

C2H2

Protein Properties

Length: 297aa MW: 30762.9 Da PI: 7.0063

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G025500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	104	126	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C + F ++ L H++ H Sobic.003G025500.1.p 104 FKCNYCQRKFYTSQALGGHQNAH 126 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.96E-7	101	131	No hit	No description
PROSITE profile	PS50157	11.572	104	131	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	106	126	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDKGSSSRTA SKEVEGMGVQ QPEDGEENVQ APGKEEEVSS AKELDLLGVL GSEPPEVKAV 60 EAVAPGKGKE KAMVAEEEKS PATGTGTGTG TATASGGVEK KRSFKCNYCQ RKFYTSQALG 120 GHQNAHKRER SLAKRGAAAV AAAAAAGGRG LYGGADPFLS PHHLRFHHAW PYSAGGSRPS 180 PFLGFGRGSA AAPFYGVHHG WSAHAQTQPS MAGLTRHTGA DLPVYTPHGY GYGSSSRAPA 240 PAVLDSTMAG LRWSGTVVDS GAGASSDHGV VEHEGPTQQE EEKEEQSCKI DLNLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G025500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	3e-40	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008678504.1	1e-126	zinc finger protein GIS
TrEMBL	C5XL74	0.0	C5XL74_SORBI; Uncharacterized protein
STRING	Sb03g002440.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13064	22	30
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	1e-14	zinc finger protein 4

Link Out ? help Back to Top
Phytozome	Sobic.003G025500.1.p
Entrez Gene	8080501