PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G018700.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TCP
Protein Properties Length: 628aa    MW: 65896.4 Da    PI: 9.3402
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G018700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.72e-34256349283
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaess 78 
                           +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +             ++++s++ ++s 
  Sobic.003G018700.3.p 256 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLETLpawqptatganaVAPPSSSTHPDSA 344
                           79**************************************************************7766655555442222222222222 PP

                   TCP  79 sssas 83 
                           ++s++
  Sobic.003G018700.3.p 345 ENSDD 349
                           22222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-31256347IPR005333Transcription factor, TCP
PROSITE profilePS5136933.257258316IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MPRHPTPSPY KFGFPNTPRC PRCVSSNLQQ LSLVPRQLAR GWQQRQSQVT HAPYGLRRGG  60
WTRIVGRRAA VAAPKQKQAG DLDPRHDHRA PRGGDGGGGG GGGGAQQEAD EQQRHHHHRL  120
LQLHQQVQQD QDPPPVPLFQ LQHLQAAAAV RQRGGLPAEY ALLTPMGDAG QSHSHHHAFQ  180
PQLLSFGGVG QHHVHQFTAQ AQAAPPAASH SRSRGGGAGG EVAVAPMSAS HSRVRGGAGG  240
GGEIVAVQGG HIVRSTGRKD RHSKVCTARG PRDRRVRLSA HTAIQFYDVQ DRLGYDRPSK  300
AVDWLIKNAK DAIDKLETLP AWQPTATGAN AVAPPSSSTH PDSAENSDDE AQAITVAHTA  360
FDFPGAAGAG GGGSGAGFLP SSLDSDSIAD TIKSFFPMAG TGGGEASSST AATQSSAMGF  420
QSYTPDLLSR TGNHSQELRL SLQSLPDPMF HHQHQDRSQQ GHGGNGSAQQ ALFPGAASYS  480
FVGGGGGTMW GEQAQSQRML PWNVPDPGGG STGSYLFNVS QQAVSQQAAH MQAALGGQSQ  540
FFFQRGPLQS SNQPSERGWP EIVEADNPMQ QQHGGGLSPT VSAIGFTPGI GFSGMRIPTR  600
IQGDEEHNGG SGNGDKPPPS VSSASHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-20263316154Putative transcription factor PCF6
5zkt_B2e-20263316154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G018700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310872.10.0transcription factor PCF5
RefseqXP_021310873.10.0transcription factor PCF5
SwissprotA2WM140.0PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A1W0VVH80.0A0A1W0VVH8_SORBI; Uncharacterized protein
STRINGSb03g001940.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-61TCP family protein