PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G007000.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 795aa    MW: 90628 Da    PI: 9.4752
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G007000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.42.8e-19119198190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fYn Y+ e+GF +rk +++++ +n+ +t++++vCs+eg +++ + +         + rtgCka++++++++d+ w+++++e++HnH+l
  Sobic.003G007000.2.p 119 DFYNLYSWEIGFGIRKGRNRTN-ENNYMTRQDLVCSCEGLPTNINAS---------SCRTGCKAMIRLHRSSDHGWVISRVETKHNHPL 197
                           6*****************9999.5555*************9997655.........99******************************9 PP

                  FAR1  90 a 90 
                           +
  Sobic.003G007000.2.p 198 S 198
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-15119198IPR004330FAR1 DNA binding domain
PfamPF105515.4E-21319403IPR018289MULE transposase domain
PROSITE profilePS509669.891592627IPR007527Zinc finger, SWIM-type
SMARTSM005750.0096602629IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MTAGDQSCKQ TAADSSTLCS SQFTQSMANQ VPNPMSQGPL PSGNEICADR PSFIHSNPVS  60
TGPIPLRRKR GKHGPEARIA PLEENPVTQA MKSYINRLGE PVFLPAVGME FNSAKEAKDF  120
YNLYSWEIGF GIRKGRNRTN ENNYMTRQDL VCSCEGLPTN INASSCRTGC KAMIRLHRSS  180
DHGWVISRVE TKHNHPLSAT YGENKQWPSH SEIDPMTKDF VQKLRENNIP IGRVCSILGV  240
HGCQAVQPIR REAVRSLCAR LAQENIKDDI GKTVKLLQEM KRSDVGMDIT FAVDDDGKIT  300
SLLWCTGKNR SDYAKFGDVV TFDTTYRTNL YNLPFGLFVG VNNHFQSIVF GGVLLTSERI  360
EDFEWCFNNF VEIMGDQCQA MASAIKSTLK NTRHRWCRWH VLRKTKQKVG PPYSKHSNFK  420
KEFNKLVTEE TMVNRFERKW RQLIRKYNLE NNQFLQRLYK YRSKWAKPYF MDIFCAGMTS  480
TQRSESANHM LKQFIQRSAP MHMFVRKFNE FQMDRNDQEG KEVHLTKQMR RKRRVGVPIE  540
RHAESIYTRR MYDKFYNELY SSGGYVIKSK DNDGNFEVAH SYTDGNPDQV CYKVRYDGGD  600
NVYCQCGLYE HMGMLCRHSL KVLVHLDVKE VPSGNIMPRW LKNDPEPETS ISATRRPDIS  660
GASVNVLKKR ALLNCILQVA YGPDDISDEA FTQAMSVVDS LVVRTTSSST ATLQSPITDN  720
NTNYKQSVAP PSVPMPKSSS TIRCPDRPIN TGRPPHSTLK SWKDQQKRAR CASTDEENPR  780
EAKTRRIVDV MAFE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G007000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310926.10.0protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1W0VV910.0A0A1W0VV91_SORBI; Uncharacterized protein
STRINGSb03g000788.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-72FAR1-related sequence 5