PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G003600.1.p

Common Name

Sb03g000490, SORBIDRAFT_03g000490

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Nin-like

Protein Properties

Length: 934aa MW: 102372 Da PI: 6.0069

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G003600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.2e-29	588	639	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Sobic.003G003600.1.p 588 AEKTISLEVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 639 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.655	578	659	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-26	591	639	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.22E-20	829	924	No hit	No description
SMART	SM00666	1.9E-24	839	921	IPR000270	PB1 domain
Pfam	PF00564	1.2E-14	839	920	IPR000270	PB1 domain
PROSITE profile	PS51745	17.825	839	921	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.7E-24	839	920	No hit	No description
CDD	cd06407	1.86E-33	840	920	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 934 aa Download sequence Send to blast
MDLDPSPASA HGDGGGCADA WPFDSLTTSM LFSSVSASPQ LQPLPANSSW LTPPSPLWLF 60 EDRHMLPLDA PDAAPEAAVA AAVVEEVQRA RSGNSDTSSK RVEQINHKWQ FHLSLDEDGT 120 DNSSLFKEKL TQALRYFKES TDQHLLVQVW APVKNGDRYV LTTSGQPFVL DHQSIGLLQY 180 RAVSMMYMFS VDGENVGELG LPGRVYKQKV PEWTPNVQYY SSGEYQRLNH AISYNVHGTV 240 ALPVFDPAAQ SCIAVVELIM TSKKINYACE VDKVCKALEA VNLKSTEILD HPNVQICNEG 300 RQAALVEILE ILTVVCEEHK LPLAQTWVPC KYRSVLAHGG GLKKSCLSFD GSCMGEVCMS 360 TSDVAFHVID AHMWGFRDAC VEHHLQRGQG VSGKAFISHK PCFSKDIQKF CKLTYPLVHY 420 ARMFGLAGCF AICLQSSYTG NDDYVLEFFL PPDCIDEDDQ NALLESILTL MKRCLRSLKV 480 VGDRYSSGAS LQLSNVLKLE NEEFKTDAQF DNSDGSLHES PGGDRHGGAH KFDNGNKKVL 540 DLTEGQLLTD DYSQDNGTSA GRPNGSGASD SSLLHKTNKP PERRRGKAEK TISLEVLQQY 600 FSGSLKNAAK SLGVCPTTMK RICRQHGISR WPSRKINKVN RSLSKLKQVI ESVQGSDAAF 660 NLTSITGPLP IPVGPSSESL NVERLTQSKV AELSNLAVDG DRDSLQKSLE NDDHFGIVMA 720 HQGFIDNNND SQLEADKASH SRSSSGEGSI NSRTSEGSCQ GSPANQTFVC KPIASTFAEP 780 QLNQEFNKEP FQEPQLPLSR MLIEDSGSSK DLKNLFTSTS DQPFLAPPNN LVSVKHSGTV 840 TIKASFKEDI VRFRFPCSGG VIVLKEEVAK RLRMDVGTFD IKYLDDDHEW VKLACNADLE 900 ECMEISRLSG SHVIRLLVSD IAAHFGSSCG SSG*

Sequence ? help Back to Top

Protein Sequence Length: 934 aa Download sequence Send to blast

MDLDPSPASA HGDGGGCADA WPFDSLTTSM LFSSVSASPQ LQPLPANSSW LTPPSPLWLF  60
EDRHMLPLDA PDAAPEAAVA AAVVEEVQRA RSGNSDTSSK RVEQINHKWQ FHLSLDEDGT  120
DNSSLFKEKL TQALRYFKES TDQHLLVQVW APVKNGDRYV LTTSGQPFVL DHQSIGLLQY  180
RAVSMMYMFS VDGENVGELG LPGRVYKQKV PEWTPNVQYY SSGEYQRLNH AISYNVHGTV  240
ALPVFDPAAQ SCIAVVELIM TSKKINYACE VDKVCKALEA VNLKSTEILD HPNVQICNEG  300
RQAALVEILE ILTVVCEEHK LPLAQTWVPC KYRSVLAHGG GLKKSCLSFD GSCMGEVCMS  360
TSDVAFHVID AHMWGFRDAC VEHHLQRGQG VSGKAFISHK PCFSKDIQKF CKLTYPLVHY  420
ARMFGLAGCF AICLQSSYTG NDDYVLEFFL PPDCIDEDDQ NALLESILTL MKRCLRSLKV  480
VGDRYSSGAS LQLSNVLKLE NEEFKTDAQF DNSDGSLHES PGGDRHGGAH KFDNGNKKVL  540
DLTEGQLLTD DYSQDNGTSA GRPNGSGASD SSLLHKTNKP PERRRGKAEK TISLEVLQQY  600
FSGSLKNAAK SLGVCPTTMK RICRQHGISR WPSRKINKVN RSLSKLKQVI ESVQGSDAAF  660
NLTSITGPLP IPVGPSSESL NVERLTQSKV AELSNLAVDG DRDSLQKSLE NDDHFGIVMA  720
HQGFIDNNND SQLEADKASH SRSSSGEGSI NSRTSEGSCQ GSPANQTFVC KPIASTFAEP  780
QLNQEFNKEP FQEPQLPLSR MLIEDSGSSK DLKNLFTSTS DQPFLAPPNN LVSVKHSGTV  840
TIKASFKEDI VRFRFPCSGG VIVLKEEVAK RLRMDVGTFD IKYLDDDHEW VKLACNADLE  900
ECMEISRLSG SHVIRLLVSD IAAHFGSSCG SSG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.9647	0.0	leaf\| panicle\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G003600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT085359	0.0	BT085359.2 Zea mays full-length cDNA clone ZM_BFc0002J20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457049.1	0.0	protein NLP3
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	C5XJJ3	0.0	C5XJJ3_SORBI; Uncharacterized protein
STRING	Sb03g000490.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G003600.1.p
Entrez Gene	8077550