PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G001701.1.p
Common NameSb03g000330, SORBIDRAFT_03g000330
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 355aa    MW: 38494.8 Da    PI: 6.4219
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G001701.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.87.3e-52241521128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrF+Ptd+e++v+yLkkk++g+ ++++++i++vdiyk++PwdLp k+  +e ew+fFs+rd+ky++g r+nr++ sgyWkatg+d
  Sobic.003G001701.1.p  24 LPPGFRFQPTDQEIIVCYLKKKIAGTATSVTSIIADVDIYKFDPWDLPDKAMFGEGEWFFFSPRDRKYPNGARPNRTAGSGYWKATGTD 112
                           79****************************999***************77777899********************************* PP

                   NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k++l++ + +  g+kk Lvfy+gr+pkg+kt+Wvmheyrl
  Sobic.003G001701.1.p 113 KPILAAgGAHCLGVKKALVFYQGRSPKGSKTEWVMHEYRL 152
                           *****9555669**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6116182IPR003441NAC domain
PROSITE profilePS5100560.16124182IPR003441NAC domain
PfamPF023654.4E-2625152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEGAAAGSGS GGSSSSLVFR GCHLPPGFRF QPTDQEIIVC YLKKKIAGTA TSVTSIIADV  60
DIYKFDPWDL PDKAMFGEGE WFFFSPRDRK YPNGARPNRT AGSGYWKATG TDKPILAAGG  120
AHCLGVKKAL VFYQGRSPKG SKTEWVMHEY RLLDTDAASR PTTAAANSMR LDDWVLCRVR  180
KKGVSLGPAA DMEDTTDYHQ QHHHQLVPEP EPDAGVFGDV VIDDDWNNSD DLLQYFIASG  240
AGSPSAHHMP QQQHDDQGPG HGHAAAESAA PPHAHHHHHA GLVSVLESIK RNLSFQAIDE  300
LYLLQPSSKR ANYMTAMLDA AAAAAHENQR RHSSMSSSPS PTCFSISDDT DEVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-672418217165NO APICAL MERISTEM PROTEIN
1ut4_B3e-672418217165NO APICAL MERISTEM PROTEIN
1ut7_A3e-672418217165NO APICAL MERISTEM PROTEIN
1ut7_B3e-672418217165NO APICAL MERISTEM PROTEIN
3swm_A3e-672418220168NAC domain-containing protein 19
3swm_B3e-672418220168NAC domain-containing protein 19
3swm_C3e-672418220168NAC domain-containing protein 19
3swm_D3e-672418220168NAC domain-containing protein 19
3swp_A3e-672418220168NAC domain-containing protein 19
3swp_B3e-672418220168NAC domain-containing protein 19
3swp_C3e-672418220168NAC domain-containing protein 19
3swp_D3e-672418220168NAC domain-containing protein 19
4dul_A3e-672418217165NAC domain-containing protein 19
4dul_B3e-672418217165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G001701.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454866.10.0NAC transcription factor 25
TrEMBLC5XJH60.0C5XJH6_SORBI; Uncharacterized protein
STRINGSb03g000330.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137971929
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-75NAC domain containing protein 25