PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G423300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 343aa MW: 37289.6 Da PI: 5.0258 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.9 | 2.7e-19 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd llv++v+ +G g+W++ ar+ g++Rt+k+c++rw++yl Sobic.002G423300.1.p 25 RGPWTVEEDMLLVNYVAAHGEGRWNALARCAGLRRTGKSCRLRWLNYL 72 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.3e-16 | 78 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Sobic.002G423300.1.p 78 RGNITAQEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.159 | 20 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.51E-31 | 23 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-16 | 24 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-17 | 25 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 26 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.47E-13 | 27 | 72 | No hit | No description |
PROSITE profile | PS51294 | 23.125 | 73 | 127 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-15 | 78 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 80 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.45E-11 | 82 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MAARDRRELS SDEESAAAAA GDLRRGPWTV EEDMLLVNYV AAHGEGRWNA LARCAGLRRT 60 GKSCRLRWLN YLRPDLRRGN ITAQEQLLIL ELHSRWGNRW SKIAQHLPGR TDNEIKNYWR 120 TRVQKHARQL NCDVNSQQFK DLMRYIWMPR LLERIGSDDS GDGAVVIDAA VHADATPSPT 180 PTLQPQPQPL LTAAAWPVDD VELSCTTAVS SSSVSTDSMH HHQQLAAVSP PPPPPPAVAS 240 AAFGESNNDG SYYGIDNSNT AMSMWDTLCQ PPHSTTAQLA GAGTCGWSDE SLLVVPSGLL 300 GDGGVYADMG FPDLCDTDTM TMWAAGAGSS ADDLWYTQTM GL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-25 | 22 | 125 | 1 | 103 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G423300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF474132 | 0.0 | AF474132.1 Sorghum bicolor typical P-type R2R3 Myb protein (Myb63) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021308491.1 | 0.0 | transcription factor MYB2 | ||||
TrEMBL | A0A1B6QGD9 | 0.0 | A0A1B6QGD9_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G176327_P01 | 1e-161 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 2e-76 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G423300.1.p |