PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G422000.1.p
Common NameSb02g043320, SORBIDRAFT_02g043320
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 353aa    MW: 39215.6 Da    PI: 7.7427
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G422000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.24.4e-344397155
               G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          kprl+WtpeLHerFveav+qLGG++kAtPkti++lm+++gLtl+h+kSHLQkYRl
  Sobic.002G422000.1.p 43 KPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSHLQKYRL 97
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.86940100IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-324198IPR009057Homeodomain-like
SuperFamilySSF466899.68E-184298IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-244398IPR006447Myb domain, plants
PfamPF002493.1E-114596IPR001005SANT/Myb domain
PfamPF143791.8E-25144190IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MYHQQQLHNH NQHLSSRPGL PPEKQFLLQG GGDAGLVLST DAKPRLKWTP ELHERFVEAV  60
HQLGGPDKAT PKTIMRLMGI PGLTLYHLKS HLQKYRLSKN LQAQANAVNA KNALSCRTGT  120
DNPCEGSGSP PPHLNLEPQI NRSMHISEAL QMQIEVQRRL HEQLEVQRHL QLRIEAQGKY  180
LQSVLEKAQE ALAKHSGVHL DGGETSTQQL SELISRATAT RRAHVQQDHQ HQHQHQHQRH  240
LGGDGSVDSC LTACEGSQCQ RERERDQDLL SIGLSSATPP TPSRRGYNND RCGAICEEFL  300
FLDEPGRRER GGGGGSSDEH GQQELDLSIN GRSNPPKPRD SQRIDLNGSS WN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-204399157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-204399157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-204399157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-204399157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.84120.0root| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G422000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794610.0HF679461.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB55 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463407.10.0myb-related protein 1
SwissprotQ9FK471e-84PHLA_ARATH; Myb-related protein 1
TrEMBLC5X5Q30.0C5X5Q3_SORBI; Uncharacterized protein
STRINGSb02g043320.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35743879
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.42e-75myb-related protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]