PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.002G421400.1.p | ||||||||
Common Name | Sb02g043270, SORBIDRAFT_02g043270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 36389.8 Da PI: 6.0523 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.5 | 1.8e-55 | 23 | 150 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdee+v++yL++k+ ++++++ vi++vd++k+ePwdLp+k+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkd Sobic.002G421400.1.p 23 LPPGFRFHPTDEEVVSHYLTHKALNSSFSC-LVIADVDLNKIEPWDLPSKAKMGEKEWYFFCHKDRKYPTGMRTNRATASGYWKATGKD 110 79**************************99.78***************99999************************************ PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ke+++ ++ lvg+kktLvfy+grap+g kt Wvmheyrle Sobic.002G421400.1.p 111 KEIFRGHRVLVGMKKTLVFYTGRAPHGGKTPWVMHEYRLE 150 *****99999****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-63 | 20 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.73 | 23 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-29 | 24 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 334 aa Download sequence Send to blast |
MASEVSSEIN QNQGGEEETR LDLPPGFRFH PTDEEVVSHY LTHKALNSSF SCLVIADVDL 60 NKIEPWDLPS KAKMGEKEWY FFCHKDRKYP TGMRTNRATA SGYWKATGKD KEIFRGHRVL 120 VGMKKTLVFY TGRAPHGGKT PWVMHEYRLE GSLPSNLRRG AKDEWAVCKV FNKDLAAKAG 180 QMAPAHAVGG GMVRSDSLAF LDDLVFDNAD LPPLIDSPYA EGGLIDFNKI AGGGASSSSI 240 AAAGTNDSAG YQVIKAEAQL PAAANNSAGG GSYSYEYQQQ AIRRLCKAEA EAPATLLLSP 300 SRGGGESSTD MFHVDDLLQL DGFMDDYSNM WKF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-55 | 19 | 178 | 13 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-55 | 19 | 178 | 13 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-55 | 19 | 178 | 13 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-55 | 19 | 178 | 13 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-55 | 19 | 178 | 16 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-55 | 19 | 178 | 16 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-55 | 19 | 178 | 16 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-55 | 19 | 178 | 16 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-55 | 19 | 178 | 16 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-55 | 19 | 178 | 16 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-55 | 19 | 178 | 16 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-55 | 19 | 178 | 16 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-55 | 19 | 178 | 13 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-55 | 19 | 178 | 13 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sbi.1420 | 0.0 | callus| root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.002G421400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM017009 | 0.0 | KM017009.1 Miscanthus lutarioriparius NAC11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002461233.1 | 0.0 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FK44 | 1e-86 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | C5X5P9 | 0.0 | C5X5P9_SORBI; Uncharacterized protein | ||||
STRING | Sb02g043270.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1862 | 38 | 104 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18270.2 | 6e-89 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.002G421400.1.p |
Entrez Gene | 8078577 |
Publications ? help Back to Top | |||
---|---|---|---|
|