PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G420700.1.p
Common NameSb02g043210, SORBIDRAFT_02g043210
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 389aa    MW: 41779.4 Da    PI: 7.6153
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G420700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.81.2e-50191461128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtd+el+ +yL++++++ ++++  +i++vdiyk++PwdLp+k+  ++ e+yfFs+rd+ky++g r+nra+ sgyWkatg+d
  Sobic.002G420700.1.p  19 LPPGFRFHPTDDELILHYLRNRAASAPCPV-PIIADVDIYKFNPWDLPAKALYGDGEYYFFSPRDRKYPNGIRPNRAAGSGYWKATGTD 106
                           79****************************.88***************77777899********************************* PP

                   NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k+++++ +g +vg+kk Lvfykgr p+g+kt+W+mheyrl
  Sobic.002G420700.1.p 107 KPIHDAaTGDAVGVKKALVFYKGRPPRGSKTNWIMHEYRL 146
                           ****9878889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-636184IPR003441NAC domain
PROSITE profilePS5100559.69319184IPR003441NAC domain
PfamPF023653.3E-2620146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDHHQTMMTT TTMSAASQLP PGFRFHPTDD ELILHYLRNR AASAPCPVPI IADVDIYKFN  60
PWDLPAKALY GDGEYYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH DAATGDAVGV  120
KKALVFYKGR PPRGSKTNWI MHEYRLAAAN GSTSPLAAAY RPPSKFRNVS MRLDDWVLCR  180
IYKKSSQASP MVPPLADYEH LDHDEPSPGG TSFDDFCTSF YAAPAVGDIG AAAASSTTTT  240
TTTTPVMHPH HHHQPAAAAL PRLPKIPSIS DLLLDEYTIA QILDAPTDIA DHHAPLAVHP  300
SLNQLLAVGG ADASDLTIYS TPPPAAAAGG KRKAMMMSPD EYAAGMMITT AAGLHHHSPP  360
PKRLNGGLPA TTSPVLGGGL NHHMLPQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-7171873171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.88811e-124callus| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G420700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0679140.0BT067914.2 Zea mays full-length cDNA clone ZM_BFc0188L19 mRNA, complete cds.
GenBankEU9713990.0EU971399.1 Zea mays clone 363807 NAC domain transcription factor mRNA, complete cds.
GenBankKP2979320.0KP297932.1 Zea mays Zma1158 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463403.10.0NAC domain-containing protein 102
TrEMBLC5X5P20.0C5X5P2_SORBI; Uncharacterized protein
STRINGSb02g043210.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.19e-81NAC-like, activated by AP3/PI