PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G389600.1.p
Common NameSb02g040550, SORBIDRAFT_02g040550
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GeBP
Protein Properties Length: 376aa    MW: 40686.7 Da    PI: 5.7892
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G389600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.88.9e-3580179297
                DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdq 86 
                           lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg  ++f+++h+q
  Sobic.002G389600.1.p  80 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRESGATFTFRSPHEQ 168
                           79************************99877778***************************************8999************ PP

                DUF573  87 kifelskkiWg 97 
                            ife+++ iW+
  Sobic.002G389600.1.p 169 AIFEIARNIWR 179
                           **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.3E-3181178IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MPPTGDEPSA AAGISFPDAD GGGGDSEDGD FAGAHLLDPT DPGLPNPTTS SATGLPHAIP  60
AAGSGGGPVT SGNGGERRPL FQRLWTEEDE IVILRGFAEF TAARGTAFAS HQYDTDPFYE  120
DMRRRLQLDF SKSQLVEKLR RLKRKYRNCV SRLRESGATF TFRSPHEQAI FEIARNIWRP  180
TNKHGRDPSA DSDDEDAAAA AQIPANTSPN GEVKSPSSAR QRRRRRVTEF NPATGAAPAT  240
NMLQPPQPVQ LSVSVPVKMD DSLPAQPQTP MPVMVTMDGS EPLRLPVVSP QSGISDAEKT  300
CLTPLFKEMI RAAINVGANP FGAKMPEPPL GLPMEGEKWR KQRILELEVY LKRIELLQDQ  360
AKATLEELRS STPGT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.56720.0leaf| pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G389600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0416520.0BT041652.1 Zea mays full-length cDNA clone ZM_BFb0025B02 mRNA, complete cds.
GenBankEU9699720.0EU969972.1 Zea mays clone 337956 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461092.10.0probable transcription factor At3g04930
TrEMBLC5X3A70.0C5X3A7_SORBI; Uncharacterized protein
STRINGSb02g040550.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.17e-42DNA-binding storekeeper protein-related transcriptional regulator