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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G372100.1.p |
Common Name | Sb02g039060, SORBIDRAFT_02g039060 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
GRAS |
Protein Properties |
Length: 551aa MW: 58296.9 Da PI: 6.5749 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G372100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 189.3 | 2.5e-58 | 152 | 535 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn.....sseelaalkl. 83
++lL cA a+++g+l ++q+lL l elas +g+p++Rlaa+ ++AL +rl + v e ++a ++ + + + ++ +l+ +l
Sobic.002G372100.1.p 152 EQLLNPCAAAIEAGNLPRTQHLLYVLGELASFSGEPNHRLAAHGLRALTRRLPHAVGEAAAATvKMPSCECPTplfsgVDLRLFCASLi 240
689*************************************************9955444444313333322225675444444444448 PP
GRAS 84 .fsevsPilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeel 158
f+evsP++ + + +aN+aI a++++ ++vH++D+++s+G+QWp+Ll+aL+ p + pps+R+T+ g+ ++ +
Sobic.002G372100.1.p 241 rFNEVSPWFAVPNALANSAIAHAASTKgavtgpRQVHVVDMGVSHGVQWPTLLEALTRVPrgSTPPSVRLTVAGPTATPpvpfsASPPG 329
9*********************99998777777888*********************76644889*********976668999888999 PP
GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
+L ++A+++++++++ a l++l + + pgE+l+V+l+++l + ++e+ +L++v++l+P+++v++e ++
Sobic.002G372100.1.p 330 YDCSPQLLRYAKSIDLDLSIVQ--APFLDTL---HGTLTPGETLIVCLQFRLGHAT------ADEQAVILRTVRDLNPELMVLTELDVG 407
9****************99876..3444444...334699**********999997......3334689******************66 PP
GRAS 248 h..nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
n s + +f+ le + ++ds++a + + +er+++E e + ++a ++ e+Wr+rl +aGF+++++ +a
Sobic.002G372100.1.p 408 GgrNVDSAASEFAARLELLWRFLDSTAAAFKGMDaDERRVMEVE-----AGTALAPTARRGATVGGGRESWRARLAAAGFEEAAFAGEA 491
544999********************777644332666666655.....56666666666566788899******************** PP
GRAS 334 akqaklllrkvksdgyrve...eesgslv.lgWkdrpLvsvSaWr 374
+++ak+llrk++s+ +++ +++v l Wk++p+ ++S Wr
Sobic.002G372100.1.p 492 VETAKALLRKYDSR-WELVppsPPAAAAVgLRWKGQPVSFCSLWR 535
************66.566544333566667**************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:2000032 | Biological Process | regulation of secondary shoot formation |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 551 aa
Download sequence Send
to blast |
MNNEREEQEP AAATTSDWLD ESIAFLAANL DLGFNDYGLL STASEAQEQH DVGGMIVETL 60 PPTATTLHQP SLNLDTSVAS SSPMTSQQEL GQPKKRKSPG HSSSQRPHAG GGGRGGGQQE 120 MGEASCVRSK PSKKVNGKGT AANSDREARW AEQLLNPCAA AIEAGNLPRT QHLLYVLGEL 180 ASFSGEPNHR LAAHGLRALT RRLPHAVGEA AAATVKMPSC ECPTPLFSGV DLRLFCASLI 240 RFNEVSPWFA VPNALANSAI AHAASTKGAV TGPRQVHVVD MGVSHGVQWP TLLEALTRVP 300 RGSTPPSVRL TVAGPTATPP VPFSASPPGY DCSPQLLRYA KSIDLDLSIV QAPFLDTLHG 360 TLTPGETLIV CLQFRLGHAT ADEQAVILRT VRDLNPELMV LTELDVGGGR NVDSAASEFA 420 ARLELLWRFL DSTAAAFKGM DADERRVMEV EAGTALAPTA RRGATVGGGR ESWRARLAAA 480 GFEEAAFAGE AVETAKALLR KYDSRWELVP PSPPAAAAVG LRWKGQPVSF CSLWRPAQAS 540 PELMVMGRGA *
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