PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G364700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 446aa    MW: 47708 Da    PI: 6.1385
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G364700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.3e-06105125323
                           ETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                           C  Cgk Fs++ +L  H+r+H
  Sobic.002G364700.1.p 105 CRECGKLFSSWKSLFGHMRSH 125
                           ********************9 PP
2zf-C2H216.13.1e-05291313123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+Cp Cgk+Fs+   L  H  +H
  Sobic.002G364700.1.p 291 YECPGCGKVFSSYQALGGHRASH 313
                           99***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.51234IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-51234IPR007087Zinc finger, C2H2
SuperFamilySSF576671.32E-101234No hitNo description
PROSITE profilePS501579.931239IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.7E-41235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
SuperFamilySSF576671.32E-1098125No hitNo description
SMARTSM003550.019103125IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408103130IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-4105125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.8E-6105125IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
PfamPF139121.2E-11290315IPR007087Zinc finger, C2H2
SuperFamilySSF576677.21E-7290313No hitNo description
SMARTSM003550.031291313IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596291318IPR007087Zinc finger, C2H2
PROSITE patternPS000280293313IPR007087Zinc finger, C2H2
SuperFamilySSF576677.21E-7371398No hitNo description
SMARTSM003552376398IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-9376399IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.949376403IPR007087Zinc finger, C2H2
PROSITE patternPS000280378400IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDVVELAAAA RHGCKVCGKS FLCGRSLGGH MRSHISLGEA ALEVHADDEL RRASPNGGRN  60
CNGVVGYGLR ENPRKTRRLS DFANEEDGGH GVGDGDGDGE QHKACRECGK LFSSWKSLFG  120
HMRSHASGGR YHDDEDDVDV EEEEFVPVPE EAEAEMVTPM EAPVAAAPAA LTVLSAPPRR  180
RRRSMRVAAP LPAPPPPVLS GFEKETEDVA LCLLMLSRDT GMWSSPAKEE PFESAEKQAG  240
LPRSGYNSDD DSALHQHGDA KIKGRVAKSS KRGSPKQRRE RDPVAPKRTR YECPGCGKVF  300
SSYQALGGHR ASHKRINASC SSPKVTPVAS PAPEPSTETY ASFNTLSPSA SPDSVAIGFG  360
KPKDDEAVAD AAVEKFECAV CFRVFASGQA LGWHKRSHSH LMPSESDDVE LYYAGGAGAD  420
HQEQHSAAVD GFLDLNFPPA APEEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G364700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560911e-89BT056091.1 Zea mays full-length cDNA clone ZM_BFb0006L02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308538.10.0zinc finger protein 865
TrEMBLA0A1B6QFD60.0A0A1B6QFD6_SORBI; Uncharacterized protein
STRINGSb02g038390.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Representative plantOGRP1267644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-18C2H2-like zinc finger protein