PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G360100.1.p | ||||||||
Common Name | Sb02g038070, SORBIDRAFT_02g038070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 198aa MW: 20427.7 Da PI: 8.818 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.1e-05 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+Cgk F + L H +H Sobic.002G360100.1.p 46 YRCPICGKAFASYQALGGHKASH 68 9***********99998888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.3E-13 | 45 | 70 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.3E-9 | 46 | 68 | No hit | No description |
PROSITE profile | PS50157 | 10.803 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.0E-4 | 46 | 69 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0035 | 46 | 68 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.3E-9 | 106 | 133 | No hit | No description |
Pfam | PF13912 | 5.9E-8 | 110 | 133 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.785 | 111 | 138 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.3 | 111 | 133 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 113 | 133 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MAQDDYLSLC LAALVAACQQ AGAEDDDAAP LRARAASSEL PLALHYRCPI CGKAFASYQA 60 LGGHKASHRK PAAAAYDGRA APSSSSSQHR QKGAAEASSS SSGSGAGAGR HVCTVCHRYF 120 ATGQALGGHK RFHYLHGPSV PASLPPSTAG AGWLDLNSTP LAQDDVPFAG VRRRGEDEEV 180 QRSLPLQAKK HRASNAA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G360100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243238 | 2e-37 | AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460951.1 | 1e-139 | zinc finger protein 1 | ||||
TrEMBL | C5XD49 | 1e-138 | C5XD49_SORBI; Uncharacterized protein | ||||
STRING | Sb02g038070.1 | 1e-139 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3412 | 32 | 73 | Representative plant | OGRP19614 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04340.1 | 1e-19 | zinc finger of Arabidopsis thaliana 6 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G360100.1.p |
Entrez Gene | 8058384 |