PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G359700.1.p | ||||||||
Common Name | Sb02g038030, SORBIDRAFT_02g038030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 22164.3 Da PI: 8.4099 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.4 | 2.6e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C++C+vlr++C++ Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe++r+++++sl+yeA r+ +Pv+Gavg++ ++ Sobic.002G359700.1.p 2 SCNGCRVLRKGCSDACVLRPCLqgidgAEAQGHATVFVAKFFGRAGLMSFLTAVPETQRPAVFQSLLYEAAGRTINPVSGAVGLLGVGS 90 6*********************9999888899********************************************************* PP DUF260 85 qqleqlkaelall 97 +q +q+++e++l+ Sobic.002G359700.1.p 91 WQTCQAAVETVLR 103 *******999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.438 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.6E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDACVLR PCLQGIDGAE AQGHATVFVA KFFGRAGLMS FLTAVPETQR 60 PAVFQSLLYE AAGRTINPVS GAVGLLGVGS WQTCQAAVET VLRGGAIGPL PEFDVGRDTF 120 ALAARRAVGC STFSTAKRAP TTTRTNVGAP PPVPLPPEPS CDLGLWLSPG SPPAPGERRR 180 PATPSLNSEE SVTTTTTSGG ARGGREPELL NLFV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G359700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065439 | 0.0 | BT065439.1 Zea mays full-length cDNA clone ZM_BFb0156D21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460949.1 | 1e-151 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 1e-64 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | C5XD46 | 1e-150 | C5XD46_SORBI; Uncharacterized protein | ||||
STRING | Sb02g038030.1 | 1e-151 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 2e-57 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G359700.1.p |
Entrez Gene | 8078982 |
Publications ? help Back to Top | |||
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