PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G357800.1.p
Common NameSb02g037890, SORBIDRAFT_02g037890
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 599aa    MW: 64475.1 Da    PI: 5.584
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G357800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.52.2e-961935972374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsP 89 
                            +lLlecA+av+++d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ +++++ s +++  + l f+e+sP
  Sobic.002G357800.1.p 193 SQLLLECARAVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTLAAASDRNT-SFDSTRRTALrFQELSP 280
                           589************************************************************99888744.44444444446****** PP

                  GRAS  90 ilkfshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerL 165
                           +  f+h++aN aIle++ ++       +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++      ++ ++e+g+r+
  Sobic.002G357800.1.p 281 WSSFGHVAANGAILESFLEAaaassepQRFHILDLSNTFCTQWPTLLEALATRSaDDTPHLSITTVVSAAPSaptaaVQRVMREIGQRM 369
                           ***************987766667778999************************889***********988889999999********* PP

                  GRAS 166 akfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                           +kfA+ +gvpf+f+++++  +l++l+l++L+++      alaVn+v +l  ++  +++ +  rd++   +++l P+vv+vve+ead+ +
  Sobic.002G357800.1.p 370 EKFARLMGVPFSFRAVHHAgDLAELDLDALDLRDggaTTALAVNCVNSLRGVV--PGAARR-RDAFAASLRRLDPRVVTVVEEEADLVA 455
                           ***************97767**************888889************9..555555.9*********************99844 PP

                  GRAS 251 e.............sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                                          Fl+ f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +e+ er+et+ +W +r+++aGF+p
  Sobic.002G357800.1.p 456 FdpdtseesgdteaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAVSWARRMRSAGFSP 543
                           34677888999999*************************************.************************************* PP

                  GRAS 327 vplsekaakqaklllrkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                           v++se++a+++++llr++  +g+++ +         + ++l Wk++pLv++SaWr
  Sobic.002G357800.1.p 544 VAFSEDVADDVRSLLRRYR-EGWSMRDAglddsaaGAGVFLAWKEQPLVWASAWR 597
                           ******************9.88888844444455355566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.777166571IPR005202Transcription factor GRAS
PfamPF035147.7E-94193597IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MDTLFRLVSL QASEQQQQQQ QQSASYNSRS TTSSGSRSSS HQTNASYNYY YHSTSSGGGG  60
GGGGQYYYGQ QHQHQHQQYY LEPYQQEECG NAHHLYMDED FSSSSSSRQH FHSHGAAVQP  120
PTSSAATPTA PTPPLSTSST AAGAAHALFE AADLSFPPDL NLDFSSPASS SGGGAASSAA  180
VGVGGGGGGR WASQLLLECA RAVAARDSQR VQQLMWMLNE LASPYGDVEQ KLASYFLQGL  240
FARLTASGPR TLRTLAAASD RNTSFDSTRR TALRFQELSP WSSFGHVAAN GAILESFLEA  300
AAASSEPQRF HILDLSNTFC TQWPTLLEAL ATRSADDTPH LSITTVVSAA PSAPTAAVQR  360
VMREIGQRME KFARLMGVPF SFRAVHHAGD LAELDLDALD LRDGGATTAL AVNCVNSLRG  420
VVPGAARRRD AFAASLRRLD PRVVTVVEEE ADLVAFDPDT SEESGDTEAA FLKVFGEGLR  480
FFSAYMDSLE ESFPKTSNER LALERGAGRA IVDLVSCPAS ESMERRETAV SWARRMRSAG  540
FSPVAFSEDV ADDVRSLLRR YREGWSMRDA GLDDSAAGAG VFLAWKEQPL VWASAWRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-16118859829420Protein SHORT-ROOT
5b3h_E1e-16118859829420Protein SHORT-ROOT
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.134840.0callus| embryo| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In P3 leaf primordium, expressed ubiquitously in the L1 layer and in the inner cells at lower levels. Not limited to the developing stomata until the last cell divisions. {ECO:0000269|PubMed:12974810}.
UniprotTISSUE SPECIFICITY: Expressed in leaves and roots. Detected in the stele, the endodermis and part of the cortex. {ECO:0000269|PubMed:12974810, ECO:0000269|PubMed:17446396}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G357800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0673280.0BT067328.1 Zea mays full-length cDNA clone ZM_BFc0012E13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308051.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLC5XD310.0C5XD31_SORBI; Uncharacterized protein
STRINGSb02g037890.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Representative plantOGRP27551332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-141GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]