PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G355000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 612aa    MW: 65564.7 Da    PI: 6.7083
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G355000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.7e-32230287260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g+Hnh+k
  Sobic.002G355000.1.p 230 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGRHNHPK 287
                           8****************************************.***************85 PP
2WRKY107.46.9e-34403461159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe
  Sobic.002G355000.1.p 403 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 461
                           59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-28220288IPR003657WRKY domain
PROSITE profilePS5081123.801224288IPR003657WRKY domain
SuperFamilySSF1182909.02E-25228288IPR003657WRKY domain
SMARTSM007743.6E-35229287IPR003657WRKY domain
PfamPF031062.1E-24230286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-38388463IPR003657WRKY domain
SuperFamilySSF1182905.89E-30395463IPR003657WRKY domain
PROSITE profilePS5081138.297398463IPR003657WRKY domain
SMARTSM007746.5E-40403462IPR003657WRKY domain
PfamPF031061.3E-26404461IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MADSPNPSSG DLPAGAGGST EKPVLADRRV AALAGAGARY KAMSPARLPI SREPCLTIPA  60
GFSPGALLES PVLLNNFKVE PSPTTGTLSM AAIINKSTHR DILPSPRDNS AGSGQEDGGS  120
RDFEFKPHLN SQLAAPAVNN QNRHDTPMQN HSSNHASPSS NLMTENKPLC SRESSHTANV  180
SSAPNQPVSI VCPSDNMPAE VGTSEMHQIN SSENAAQEAQ TENVAEKSAE DGYNWRKYGQ  240
KHVKGSENPR SYYKCTHPNC EVKKLLERSL DGQITEVVYK GRHNHPKPQP NRRLAAGAVP  300
SSQGEERYDG VAPIEDKPSN IYSNLCNQVH SAGMIDTVPG PASDDDVDAG GGRPYPGDDA  360
NDDDDLDSKR RKMESAGIDA ALMGKPNREP RVVVQTVSEV DILDDGYRWR KYGQKVVKGN  420
PNPRSYYKCT HTGCPVRKHV ERASHDPKSV ITTYEGKHNH EVPASRNASH EMSTAPMKPV  480
VHPINSNMPG LGGMMRACDA RAFTNQYSQA AESDTISLDL GVGISPNHSD ATNQMQPSVP  540
EPMQYQMQHM APVYGSMGLP GMPVAAVPGN AASSIYGSRD EKGNEGFTFK ATPLDRSANF  600
YSSAGNLVMG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36230464878Probable WRKY transcription factor 4
2lex_A3e-36230464878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.43370.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}.
UniprotTISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G355000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548880.0BT054888.1 Zea mays full-length cDNA clone ZM_BFc0109P23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310435.10.0WRKY transcription factor SUSIBA2-like isoform X1
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A1B6QF720.0A0A1B6QF72_SORBI; Uncharacterized protein
STRINGGRMZM2G398506_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-121WRKY family protein