PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G353800.1.p | ||||||||
Common Name | Sb02g037560, SORBIDRAFT_02g037560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 232aa MW: 25585.6 Da PI: 6.5147 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 5.1e-19 | 56 | 109 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+e Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k Sobic.002G353800.1.p 56 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 109 45589***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 116 | 2.1e-37 | 56 | 146 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kkrrls+eqv++LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da ++++Le+ev +L+e+ Sobic.002G353800.1.p 56 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDAAILHKCHLENEVMRLKER 144 9**************************************************************************************98 PP HD-ZIP_I/II 91 lk 92 l Sobic.002G353800.1.p 145 LV 146 85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.79E-17 | 50 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.277 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-17 | 54 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.30E-15 | 56 | 111 | No hit | No description |
Pfam | PF00046 | 2.6E-16 | 56 | 109 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-18 | 56 | 109 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEEYDGLFPS AYVDSSSSLL VPNGTAQGER PRARRRRRRA PRCGGGGDLD GGGDPKKRRL 60 SDEQVEMLEL SFREERKLET GRKVHLAAEL GLDPKQVAVW FQNRRARHKS KLLEEEFAKL 120 KQAHDAAILH KCHLENEVMR LKERLVLAEE ELTRFRSAGS HAVSGDGGDI MGRAVCSGSP 180 SSSFSTGTCH QPGVDVGGGD HLGDDDQLLY VPDYAYADNS VVEWFSLYGL M* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 38 | RPRARRRRRR |
2 | 33 | 41 | RRRRRRAPR |
3 | 36 | 58 | RRRAPRCGGGGDLDGGGDPKKRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G353800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039959 | 0.0 | BT039959.1 Zea mays full-length cDNA clone ZM_BFc0054M14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460922.1 | 1e-169 | homeobox-leucine zipper protein HOX14 | ||||
Swissprot | Q7XI85 | 4e-89 | HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14 | ||||
TrEMBL | C5XCG1 | 1e-168 | C5XCG1_SORBI; Uncharacterized protein | ||||
STRING | Sb02g037560.1 | 1e-169 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 | Representative plant | OGRP3776 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 8e-39 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G353800.1.p |
Entrez Gene | 8078955 |
Publications ? help Back to Top | |||
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