PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G353700.1.p
Common NameSb02g037550, SORBIDRAFT_02g037550
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 785aa    MW: 86766.1 Da    PI: 6.9846
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G353700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-054971123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C+ Cgk F r  nL+ H r H
  Sobic.002G353700.1.p 49 FVCEVCGKGFQRDQNLQLHRRGH 71
                          89******************988 PP
2zf-C2H215.64.7e-05128149223
                           EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                            Cp Cgk++  + +Lk H +t+
  Sobic.002G353700.1.p 128 ACPRCGKRYAVQADLKAHAKTC 149
                           6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-84871No hitNo description
PROSITE profilePS5015711.6354971IPR007087Zinc finger, C2H2
SMARTSM003550.0144971IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-54971IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
SMARTSM003559092122IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-5115148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.23E-8122147No hitNo description
SMARTSM0035590127147IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663127155IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MQPPHPEAGP EQEAVPAPVK KKRNLPGTPD PDAEVIALSP GTLLATNRFV CEVCGKGFQR  60
DQNLQLHRRG HNLPWRLRQR GPGAAPPRRR VYVCPEPGCV HHAPTRALGD LTGIKKHFCR  120
KHGEKRWACP RCGKRYAVQA DLKAHAKTCG TREYRCDCGT LFTRRDSFVT HRAFCGALGE  180
ETGRVLAPPA PPSPRPPDLE AENVDKDKDN DKGEEENEDS AVAEVEEPQR VEVVPEEPQR  240
IPSPPPLPQE PPTHPSPPPL PQEPPRHQSP PPLPQEPPRR LSPPPLPKEP PRRLSPPPLP  300
KEPRCRPTPP PLPKEPQRLP FPLEQQPVVA LVPNLDEPEV VAVPTVTAKI EDEADQDEDT  360
CFQEADQYKD AELEVSNLLD KDTPMPPCLL PSPSEAIGTD GSSTTCGAGG SVSNSIAPST  420
TTNTFAGLFA SATTSTTSQS RSLRDLIGVD PTFLCLAIGA PSMFPQTSAS NSGTFAPPPA  480
PHMSATALLQ KATEAGATQS SSSFLKEFGL ASSSLSSPPS KQQPQGRIAD TSTEPWQYRR  540
NQQMEMERHQ SHQRREMESS SQPWHPRSTQ QMEMERHHRN HQQREMESSS QQWHHHRNHQ  600
QREMESSSQQ WHHHRNDQQM VGLESYRSNQ QMQMESSSQR WLHPRSYQQQ MEVDSSLQRW  660
PHHRSNQQQM EMMERHHRSN QQQMERESRA MLSGGLGLGL AYESGNSGLP DLVMGPSPLF  720
GPKPAATLDF LGLGIGGTMG GSTVANRGLP ALMIGGELDM GSSAQVPAPW EDAKRKTNNG  780
RTIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-29123185365Zinc finger protein JACKDAW
5b3h_F3e-29123185365Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.84630.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G353700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0663580.0BT066358.1 Zea mays full-length cDNA clone ZM_BFc0009B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460921.10.0ATM interactor
TrEMBLC5XCG00.0C5XCG0_SORBI; Uncharacterized protein
STRINGSb02g037550.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.12e-91C2H2 family protein