PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G350500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 319aa MW: 34027.6 Da PI: 6.5114 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.2e-18 | 49 | 99 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr+++ +grWvAeI+d + ++ r +lg+f tae Aaka+++a++ l+g Sobic.002G350500.1.p 49 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAAKAYDEAARLLRG 99 79********.7*********32...35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.6E-12 | 49 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-19 | 49 | 108 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.49E-17 | 49 | 107 | No hit | No description |
PROSITE profile | PS51032 | 20.165 | 50 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-27 | 50 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-35 | 50 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-7 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-7 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MELLHFQAQP PVFQLEDYSS YYYYYQQEAA AQAKPSKPRG RKKGSNNHSK FVGVRQRPSG 60 RWVAEIKDTT QKIRMWLGTF ETAEAAAKAY DEAARLLRGT DARTNFAPRI SPDCPLAVRI 120 RGLLHHKKIK KAKAAAASSS AAAVAAAAKQ QASSSPVPTT SNSNSNSNSN SHSTNSACGG 180 GSSSSSSMSS SSSSCDDAIA MPHGGIGALD AGEVYRPEFA TAGAEEFDSW MFDSAFGQFP 240 ALDSFAAVDD AVPAAGTTEE SVAAATPGDE MAEFERIKVE RRISASLYAM NGLQEYFDRV 300 IDASACDSLW DLSPLCHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-13 | 48 | 106 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G350500.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040415 | 0.0 | BT040415.1 Zea mays full-length cDNA clone ZM_BFc0090C04 mRNA, complete cds. | |||
GenBank | JX469953 | 0.0 | JX469953.1 Zea mays subsp. mays clone UT3215 AP2-EREBP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310307.1 | 0.0 | ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | C5XCA9 | 0.0 | C5XCA9_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G011236_P01 | 1e-138 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3900 | 32 | 73 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 9e-27 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G350500.1.p |