PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G342800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 461aa    MW: 49275 Da    PI: 5.9881
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G342800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3642.1e-111754462374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                            +lLl+cAeav+ ++l++a++lL ++ elasp g++ +R+aayf  AL ar+++s  + y+ l+ ++ +  +s +++ a+++++ +sP+
  Sobic.002G342800.1.p  75 LSLLLRCAEAVAMDQLTEARELLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRQLAAAQSRRVAVAFQAYNALSPL 163
                           689************************************************************************************** PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                           +kfsh+taNqaIl+a++ge+++H+iD+di+qGlQWp L++ LasRp++p slRiTg+g+    s + le+tg+rLa+fA++lg+pfef+
  Sobic.002G342800.1.p 164 VKFSHFTANQAILQALDGEDCLHVIDLDIMQGLQWPGLFHILASRPRKPRSLRITGLGA----SLDVLEATGRRLADFAASLGLPFEFH 248
                           ***********************************************************....9************************* PP

                  GRAS 180 vl......vakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                           ++      va++ + l  ++ + ++  +Ea++V++++  h l+d ++s       +++l++sl+Pk++++veq++ h s++Fl rf+ea
  Sobic.002G342800.1.p 249 PIegkighVADAAALLGSRQHQNQQrdDEATVVHWMH--HCLYDVTGSDVG----TVRLLRSLRPKLITIVEQDLGH-SGDFLGRFVEA 330
                           *96665544444444433333333367*********9..889988999998....**********************.899******** PP

                  GRAS 261 leyysalfdsleak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                           l+yysalfd+l  +   + +es er  vEr+llg ei+n+va  g +r+ + + +e+W + l++aGF+pv+l  + a+qa+lll ++++
  Sobic.002G342800.1.p 331 LHYYSALFDALGDGagaAEEESAERYAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVSLAGSPATQARLLLGMYPW 418
                           ***********544122344559************************998887.9********************************** PP

                  GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                           +gy++ ee+++l lgWkd +L+++SaW+
  Sobic.002G342800.1.p 419 KGYTLVEEDACLRLGWKDLSLLTASAWE 446
                           ***************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.00448426IPR005202Transcription factor GRAS
PfamPF035147.2E-10975446IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MLQGVLSRAP ATDAAAAAAM KAKRSAASPG EEEEGDGRSA RGGKRQQLLA LGPATALASA  60
VAAEEGPETR GLRLLSLLLR CAEAVAMDQL TEARELLPEI AELASPFGSS PERVAAYFGD  120
ALCARVLSSY LGAYSPLALR QLAAAQSRRV AVAFQAYNAL SPLVKFSHFT ANQAILQALD  180
GEDCLHVIDL DIMQGLQWPG LFHILASRPR KPRSLRITGL GASLDVLEAT GRRLADFAAS  240
LGLPFEFHPI EGKIGHVADA AALLGSRQHQ NQQRDDEATV VHWMHHCLYD VTGSDVGTVR  300
LLRSLRPKLI TIVEQDLGHS GDFLGRFVEA LHYYSALFDA LGDGAGAAEE ESAERYAVER  360
QLLGAEIRNI VAVGGPKRTG EVRVERWGDE LRRAGFRPVS LAGSPATQAR LLLGMYPWKG  420
YTLVEEDACL RLGWKDLSLL TASAWEPADD AAASAPTTTS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1568044725380Protein SCARECROW
5b3h_A1e-1568044724379Protein SCARECROW
5b3h_D1e-1568044724379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G342800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9562380.0EU956238.1 Zea mays clone 1559464 nodulation signaling pathway 2 protein mRNA, complete cds.
GenBankKJ7269610.0KJ726961.1 Zea mays clone pUT3661 GRAS transcription factor (GRAS54) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460873.20.0scarecrow-like protein 23
SwissprotQ9FHZ11e-174SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A1B6QF060.0A0A1B6QF06_SORBI; Uncharacterized protein
STRINGGRMZM2G106548_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Representative plantOGRP21831437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-143GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]