PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G342100.2.p
Common NameSb02g036620, SORBIDRAFT_02g036620
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 419aa    MW: 44099.3 Da    PI: 7.7091
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G342100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.99.7e-54271551128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+d
  Sobic.002G342100.2.p  27 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-AIIAEVDLYKFDPWELPDKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTD 114
                           79****************************.88***************8888999********************************** PP

                   NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k+++++  ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl
  Sobic.002G342100.2.p 115 KPIMASggNREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 155
                           *****9888888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-6324193IPR003441NAC domain
PROSITE profilePS5100561.90727193IPR003441NAC domain
PfamPF023651.0E-2728155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MRSMESTDSS SGELPPPQKQ PSSAPDLPPG FRFHPTDEEL VVHYLKKKAA SVPLPVAIIA  60
EVDLYKFDPW ELPDKATFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPIMAS  120
GGNREKVGVK KALVFYRGKP PKGLKTNWIM HEYRLADAAS STTSRPPPPC NVGGGKATSL  180
RLDDWVLCRI YKKINKLGAG ERSMDCEDSV EDAVAAYPTH AAAAMAAAVA GGGRAAHHNG  240
NSYTSLIHHH HEDNFLDGFM TAEDTGLSAG ASSLSQLAAA ARAAAPADTK QLLVPSSSTT  300
PFNWLDASAL AILPPSKRFH GYNSGGTSTD GGGTSLSSPS ERNNLAAAGA VDSGACSGGA  360
NAIVPTFLNP LGVQGATTYH HHAIFGTPVT PEAAAAAATT ATCGFQHPYQ LSGVNWNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-732119311165NO APICAL MERISTEM PROTEIN
1ut4_B7e-732119311165NO APICAL MERISTEM PROTEIN
1ut7_A7e-732119311165NO APICAL MERISTEM PROTEIN
1ut7_B7e-732119311165NO APICAL MERISTEM PROTEIN
4dul_A7e-732119311165NAC domain-containing protein 19
4dul_B7e-732119311165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G342100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0859890.0BT085989.1 Zea mays full-length cDNA clone ZM_BFc0095M07 mRNA, complete cds.
GenBankBT0864670.0BT086467.1 Zea mays full-length cDNA clone ZM_BFc0169O24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463039.10.0NAC transcription factor NAM-B2
SwissprotA0SPJ90.0NAM2_HORVV; NAC transcription factor NAM-2
TrEMBLC5XBN10.0C5XBN1_SORBI; Uncharacterized protein
STRINGSb02g036620.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75723649
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.19e-91NAC domain containing protein 25
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]