PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G340000.3.p

Common Name

Sb02g036450, SORBIDRAFT_02g036450

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 900aa MW: 101295 Da PI: 6.8239

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G340000.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85	1.2e-26	112	199	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+l+++++ +gk+++t+++ +HnH+l Sobic.002G340000.3.p 112 EFYNAYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KEAKCPRPETRIGCPASLTIRLTANGKYRLTEFVPNHNHQL 198 6******************97766.************9999.999***********************************9 PP FAR1 90 a 90 a Sobic.002G340000.3.p 199 A 199 7 PP
2	FAR1	84.9	1.3e-26	241	327	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA ++GFsvr+++++ + +++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ ++gk++vt++++ HnH+l Sobic.002G340000.3.p 241 EFYSMYAGKIGFSVRRASMTVN-TENVITRRMFVCSKEGFREKKRGA-KRVKNPRPETRTGCPACMVIRLGTNGKYQVTEFVTCHNHQL 327 6**************99998.5666************9998.99***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-24	112	199	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	5.6E-23	241	327	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-23	444	538	IPR018289	MULE transposase domain
Pfam	PF04434	9.9E-8	712	758	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.719	712	759	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.3E-7	734	761	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 900 aa Download sequence Send to blast
MPSASGEKDP QVTPSPATGP PLLQTLMPVN ATGSPAIDPR LAQQSWPGHV VLLRPCAPWP 60 PHVPVPLLLP QQNVDAMADV AAADVNPAID SCDEKMLPKV NMLFDGESDA YEFYNAYAEK 120 VGFFVRRSTL WTTSKNIITR RTFVCSREGF REKKKGAKEA KCPRPETRIG CPASLTIRLT 180 ANGKYRLTEF VPNHNHQLAT ASTVHMLKAK EIRRKARAAR ENLADDTVST PEFENEDEAY 240 EFYSMYAGKI GFSVRRASMT VNTENVITRR MFVCSKEGFR EKKRGAKRVK NPRPETRTGC 300 PACMVIRLGT NGKYQVTEFV TCHNHQLGAA AASDLVMASG STENDQDDGV DQADRSPDNS 360 VHTQNLINGS ATLNSLERRS CKRYKCTKTP HSGDVGATLE YLQKAQHDNP SFFYAVKSDE 420 DGNFTNFFWA DSKSIVDFFH FGDVVCFDSG YALQGYDRPF ALFTGVNHHK QTVIFGAAII 480 YDESKEAFKW LLDTFKMAMN GTHPKTLLTD RSVALSEAVA ATLPATAHRY CVWQIYQNAL 540 QQLSQAFHGS KTLECNFKRC LFDCEDEDEF VTAWKEMLEK YDLEDNQWLA DLFSIKEKWA 600 LAYGRDAFYA DMKSVQQKES LTSELKEHLS LECDLLNFFE QFERLLCDRR SAELEADVNA 660 NQSTKKPPSM RMLRQAATVY TPSAFKMFER EFELYMDCML YICGEMGTIF EYRISVEDKP 720 RDHFVKFDSV NSMMNCTCKT FQFIGIPCRH MLKVLDTRNI KDLPIQYIVK RWRKDAKSGS 780 SNGGCAFSFD GDPDSAHIKR YNFLCRMFSI AAARAATSAE SFAYMENHSN ILMDQIEQVI 840 QTRPPGIADL IGANCDRTQN SVDNIVSEGI HSHTNFLNGS TDGSLTFPFT LGAGTLDYR*

Sequence ? help Back to Top

Protein Sequence Length: 900 aa Download sequence Send to blast

MPSASGEKDP QVTPSPATGP PLLQTLMPVN ATGSPAIDPR LAQQSWPGHV VLLRPCAPWP  60
PHVPVPLLLP QQNVDAMADV AAADVNPAID SCDEKMLPKV NMLFDGESDA YEFYNAYAEK  120
VGFFVRRSTL WTTSKNIITR RTFVCSREGF REKKKGAKEA KCPRPETRIG CPASLTIRLT  180
ANGKYRLTEF VPNHNHQLAT ASTVHMLKAK EIRRKARAAR ENLADDTVST PEFENEDEAY  240
EFYSMYAGKI GFSVRRASMT VNTENVITRR MFVCSKEGFR EKKRGAKRVK NPRPETRTGC  300
PACMVIRLGT NGKYQVTEFV TCHNHQLGAA AASDLVMASG STENDQDDGV DQADRSPDNS  360
VHTQNLINGS ATLNSLERRS CKRYKCTKTP HSGDVGATLE YLQKAQHDNP SFFYAVKSDE  420
DGNFTNFFWA DSKSIVDFFH FGDVVCFDSG YALQGYDRPF ALFTGVNHHK QTVIFGAAII  480
YDESKEAFKW LLDTFKMAMN GTHPKTLLTD RSVALSEAVA ATLPATAHRY CVWQIYQNAL  540
QQLSQAFHGS KTLECNFKRC LFDCEDEDEF VTAWKEMLEK YDLEDNQWLA DLFSIKEKWA  600
LAYGRDAFYA DMKSVQQKES LTSELKEHLS LECDLLNFFE QFERLLCDRR SAELEADVNA  660
NQSTKKPPSM RMLRQAATVY TPSAFKMFER EFELYMDCML YICGEMGTIF EYRISVEDKP  720
RDHFVKFDSV NSMMNCTCKT FQFIGIPCRH MLKVLDTRNI KDLPIQYIVK RWRKDAKSGS  780
SNGGCAFSFD GDPDSAHIKR YNFLCRMFSI AAARAATSAE SFAYMENHSN ILMDQIEQVI  840
QTRPPGIADL IGANCDRTQN SVDNIVSEGI HSHTNFLNGS TDGSLTFPFT LGAGTLDYR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G340000.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT062235	0.0	BT062235.1 Zea mays full-length cDNA clone ZM_BFb0229O21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002460862.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1W0W6X8	0.0	A0A1W0W6X8_SORBI; Uncharacterized protein
STRING	Sb02g036450.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-108	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sobic.002G340000.3.p
Entrez Gene	8056337