PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G312300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | SBP | ||||||||
Protein Properties | Length: 219aa MW: 21940.1 Da PI: 10.5321 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 120.3 | 9.3e-38 | 117 | 192 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqve+C+ad+ k+y+rrhkvC++h ka+vvl++gl+qrfCqqCsrfhels+fD++krsCr rLa+hnerrr++ Sobic.002G312300.1.p 117 CQVERCNADMGVEKRYNRRHKVCDAHRKASVVLLAGLRQRFCQQCSRFHELSHFDDTKRSCRLRLAGHNERRRRNP 192 *************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.0E-31 | 110 | 178 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.342 | 114 | 191 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.47E-34 | 115 | 195 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.7E-29 | 117 | 190 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MPDSSFASTG MAPSSSAAAS MAALAAAAAS GDGSDDSGAA KNGGAPPTHG VEAGNNPAEL 60 AAAVGGASSS SSRAAARSRV AAAAGASGSS PVAAARSRGA GAVAAAAGGG GGVGPSCQVE 120 RCNADMGVEK RYNRRHKVCD AHRKASVVLL AGLRQRFCQQ CSRFHELSHF DDTKRSCRLR 180 LAGHNERRRR NPAEAHDQNG GRGDPGNHHL HIRSDKPI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-32 | 117 | 190 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G312300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068292 | 1e-150 | BT068292.2 Zea mays full-length cDNA clone ZM_BFb0099E12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462903.2 | 1e-151 | squamosa promoter-binding-like protein 13 | ||||
TrEMBL | A0A1B6QED2 | 1e-150 | A0A1B6QED2_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G067624_P02 | 1e-68 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8524 | 32 | 48 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 8e-34 | squamosa promoter binding protein-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G312300.1.p |