PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G306000.2.p
Common NameSb02g033620, SORBIDRAFT_02g033620
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CAMTA
Protein Properties Length: 915aa    MW: 102439 Da    PI: 8.403
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G306000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1163.82.9e-51331473117
                  CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                           +  +rw +++ei+a+L+n++++++++++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++e++
  Sobic.002G306000.2.p  33 EAGTRWFRPNEIYAVLANYARFKVHAQPIDKPISGTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEEKVHVYYARGEDD 121
                           4479************************************************************************************* PP

                  CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                           p+f rrcywlL++ele+ivlvhy+++
  Sobic.002G306000.2.p 122 PNFFRRCYWLLDKELERIVLVHYRQT 147
                           ***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143772.72127153IPR005559CG-1 DNA-binding domain
SMARTSM010769.8E-6130148IPR005559CG-1 DNA-binding domain
PfamPF038593.4E-4434146IPR005559CG-1 DNA-binding domain
SuperFamilySSF812965.32E-11379465IPR014756Immunoglobulin E-set
CDDcd002046.77E-16541666No hitNo description
Gene3DG3DSA:1.25.40.201.9E-18565674IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.55E-18567672IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.802574678IPR020683Ankyrin repeat-containing domain
PfamPF127961.1E-8580670IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.808607639IPR002110Ankyrin repeat
SMARTSM002486.3E-6607636IPR002110Ankyrin repeat
SMARTSM00248270646675IPR002110Ankyrin repeat
SuperFamilySSF525404.25E-9722823IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.42772794IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.316773802IPR000048IQ motif, EF-hand binding site
PfamPF006120.017775793IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0019795817IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.694796820IPR000048IQ motif, EF-hand binding site
PfamPF006127.3E-4797817IPR000048IQ motif, EF-hand binding site
SMARTSM000157.3876898IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.249878906IPR000048IQ motif, EF-hand binding site
PfamPF006120.12879898IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 915 aa     Download sequence    Send to blast
MAGGAGGRDP LVASEIHGFL TSADLNFDKL MMEAGTRWFR PNEIYAVLAN YARFKVHAQP  60
IDKPISGTVV LYDRKVVRNF RKDGHNWKKK KDGKTVQEAH EKLKIGNEEK VHVYYARGED  120
DPNFFRRCYW LLDKELERIV LVHYRQTSEE NALPPPHAEA EVAEVPPINM AHYTSPLTST  180
DSASAHTELS SVAAAPEINS NGGRAISSET DDHGSSLESF WADLLESSMK NDTPIGASSC  240
GGSLASNQQT NNGTRDSGNN ILHANATSNA IFAPTTNVVS EAYANPGHNQ ASENYFGSLK  300
HQANNSPSLL TSDLDSQSKQ HANSLMKAPV YGNMPNDVPA RQNSLGLWKY LDDDISLENN  360
PSSGILPTEQ VTDERPFHIT DISSEWAYCT EETKVLVVGY FHENYKHLAG TNLFCVIGDQ  420
CVVANIVQTG VYRLIVRPHV PGQVNLYLTL DGKTPISEVL SFDYRMVPDS QILADDEPQK  480
SKLQMQMRLA RLLFTTNKKK MAPKFLVEGT KVSNLLSVSA EKEWMDLLKF GSDSKGTYVP  540
AIEGLLELVL RNRLQEWLVE KVIEGQKSTD RDDLGQGPIH LCSFLGYTWA IRLFSLSGFS  600
LDFRDSSGWT ALHWAAYYGR EKMVAALLSA GANPSLVTDP THDDPGGYTA ADLAARQGYD  660
GLAAYLAEKG LTAHFEAMSL SKDKRSTSRT QSLKQNTMEF ENLSEQELCL RESLAAYRNA  720
ADAANNIQAA LRERTLKLQT KAIQLANPET EAASIVAAMR IQHAFRNYNR KKMMRAAARI  780
QSHFRTWQIR RNFMNMRRQA IKIQAAYRGH QVRRQYRKVL WSVGVVEKAI LRWRKKRKGL  840
RGIATGMPVE MATDAEAAST AEEDYYQVGR QQAEDRFNRS VVRVQALFRS HRAQQEYRRM  900
KVAHEEAKVE FSQN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.185620.0embryo| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G306000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0879100.0BT087910.1 Zea mays full-length cDNA clone ZM_BFb0305J11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308813.10.0calmodulin-binding transcription activator 6 isoform X1
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A1B6QE930.0A0A1B6QE93_SORBI; Uncharacterized protein
STRINGSb02g033620.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Representative plantOGRP73511116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators