PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G293000.3.p | ||||||||
Common Name | Sb02g032400, SORBIDRAFT_02g032400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 534aa MW: 55063.2 Da PI: 9.3084 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.3e-05 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Sobic.002G293000.3.p 71 FVCEVCNKGFQREQNLQLHRRGH 93 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00026 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Sobic.002G293000.3.p 147 WKCDKCNKRYAVQSDWKAHSKTC 169 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.54E-7 | 70 | 93 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.2E-6 | 70 | 93 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.094 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 3.4E-5 | 71 | 93 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0041 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 300 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.9E-5 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.54E-7 | 142 | 167 | No hit | No description |
SMART | SM00355 | 110 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MAAASSAPFF GLADTQMQPQ AGSSSLQQNS TAAPDVAAPP PKKKRNQPGN PNPDAEVIAL 60 SPRTLLATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKNPKDVRRR VYLCPEPTCV 120 HHDPSRALGD LTGIKKHYCR KHGEKKWKCD KCNKRYAVQS DWKAHSKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAR ESAQMPPLGA GLYAGPGSMS LGLSGTVAQM HGFADQAGQS 240 SSAAAAQFDH IMPSSSGSSS MFRSQASASS PSYFLGGGAP PAAQDFSEDG SQGSQGPLLH 300 GKAPFHGLMQ LPEQHHQPGP GSSNAAVANG NNSLLNLGFF SAGNNGGTSG SQDARLVIQD 360 QFNVTGGGGG SAEHGNNLMA SLGSHLGGGF PSLYNNSSPS AGLAQNSATA LLMKAAQMGS 420 TSSTAHNNGT TSTLFRAVSF SAAAAAAASG QGTSRAAGEG TTTSHEAHFH ELIMNSLAGG 480 GGAAGTGGFS GATAGFGGVD DGKLSTRDFL GVGRGAMAPP GLHIGALDPA QMK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 9e-34 | 143 | 208 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 9e-34 | 143 | 208 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.1782 | 0.0 | embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G293000.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY754865 | 0.0 | AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462813.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_021309955.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | C5X7R9 | 0.0 | C5X7R9_SORBI; Uncharacterized protein | ||||
STRING | Sb02g032400.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.1 | 1e-109 | indeterminate(ID)-domain 4 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G293000.3.p |
Entrez Gene | 8077242 |