PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G293000.2.p
Common NameSb02g032400, SORBIDRAFT_02g032400
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 534aa    MW: 55063.2 Da    PI: 9.3084
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G293000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-057193123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C+ C+k F r  nL+ H r H
  Sobic.002G293000.2.p 71 FVCEVCNKGFQREQNLQLHRRGH 93
                          89*******************88 PP
2zf-C2H213.20.00026147169123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC +C+k++  +s+ k H +t+
  Sobic.002G293000.2.p 147 WKCDKCNKRYAVQSDWKAHSKTC 169
                           58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.54E-77093No hitNo description
Gene3DG3DSA:3.30.160.607.2E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0947193IPR007087Zinc finger, C2H2
PfamPF121713.4E-57193IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00417193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355300112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-5135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.54E-7142167No hitNo description
SMARTSM00355110147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MAAASSAPFF GLADTQMQPQ AGSSSLQQNS TAAPDVAAPP PKKKRNQPGN PNPDAEVIAL  60
SPRTLLATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKNPKDVRRR VYLCPEPTCV  120
HHDPSRALGD LTGIKKHYCR KHGEKKWKCD KCNKRYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAR ESAQMPPLGA GLYAGPGSMS LGLSGTVAQM HGFADQAGQS  240
SSAAAAQFDH IMPSSSGSSS MFRSQASASS PSYFLGGGAP PAAQDFSEDG SQGSQGPLLH  300
GKAPFHGLMQ LPEQHHQPGP GSSNAAVANG NNSLLNLGFF SAGNNGGTSG SQDARLVIQD  360
QFNVTGGGGG SAEHGNNLMA SLGSHLGGGF PSLYNNSSPS AGLAQNSATA LLMKAAQMGS  420
TSSTAHNNGT TSTLFRAVSF SAAAAAAASG QGTSRAAGEG TTTSHEAHFH ELIMNSLAGG  480
GGAAGTGGFS GATAGFGGVD DGKLSTRDFL GVGRGAMAPP GLHIGALDPA QMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-34143208368Zinc finger protein JACKDAW
5b3h_F9e-34143208368Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.17820.0embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G293000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548650.0AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462813.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_021309955.10.0protein indeterminate-domain 5, chloroplastic
TrEMBLC5X7R90.0C5X7R9_SORBI; Uncharacterized protein
STRINGSb02g032400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-109indeterminate(ID)-domain 4