PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G290600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ARF | ||||||||
Protein Properties | Length: 664aa MW: 72693.2 Da PI: 8.0684 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.8 | 2.3e-19 | 143 | 244 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f k+lt+sdv++ g +++p+ +a ++ +++ + + +d +g +W++++ yr+++ r+++t+GW++Fv+ ++L gD+vvF Sobic.002G290600.1.p 143 FAKTLTQSDVNTGGGFTVPRLCALSIfpeldysF-DPPLQ-FIPATDVHGVEWTFRHVYRGNPPRHLITAGWSNFVHNKKLLPGDSVVF 229 89**************************999953.44443.69999******************************************* PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++++++ +++++r+ Sobic.002G290600.1.p 230 V--REEDGKVHIGLRRA 244 *..5589999**99986 PP | |||||||
2 | Auxin_resp | 103.6 | 2.3e-34 | 276 | 359 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+ +++Fevv++Pras++eF+v+++ v++++++++++G Rfkmafeted s++++ +Gt++gv+ +dp rWp S+Wr+L+ Sobic.002G290600.1.p 276 AARLAAAGQPFEVVHYPRASAPEFCVRADAVKESMRSPWCPGLRFKMAFETEDLSRISWfMGTIAGVEPADPARWPLSPWRLLQ 359 678999****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-30 | 135 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.28E-25 | 138 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.10E-19 | 142 | 239 | No hit | No description |
SMART | SM01019 | 1.5E-16 | 143 | 245 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.674 | 143 | 245 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.4E-17 | 143 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.3E-30 | 276 | 359 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 14.387 | 572 | 653 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MSTCAPTRLG TTLTFAAREP PSPEPEDKGR DVHPQLWQAC AGSMCAVPPV GAADYYFPQG 60 HAEQAGAAVD LRVVPPFVAC RVAAVRLMAE PDTDDIYAKI RLVPLRPWEP VTDVGDALLG 120 EGSRGGDGDG QQRRRRRPRP LSFAKTLTQS DVNTGGGFTV PRLCALSIFP ELDYSFDPPL 180 QFIPATDVHG VEWTFRHVYR GNPPRHLITA GWSNFVHNKK LLPGDSVVFV REEDGKVHIG 240 LRRAKRVFCG GNAGRSGAAV AGPSDGKVPA EDVVEAARLA AAGQPFEVVH YPRASAPEFC 300 VRADAVKESM RSPWCPGLRF KMAFETEDLS RISWFMGTIA GVEPADPARW PLSPWRLLQV 360 TWDEPELLQN VKRVCPWRVE LVSSMPNLPW FSPPPRKKPR TPAYTETLSE SERQQLFDPA 420 FPFPPTPPLP FFSDLHLSKY LEQSLLSYGI RPADHQAPPA PRIDTDLKNG SPTPRSPSTE 480 AKKGDDVKPP GTIMLFGRAI LTEEQMKRSN GSGGVPTSPR ATSSGDEKAS NTSDRSRSDV 540 SHGSPAAKKI SPSSWRLWRS GDSSPSEFAL EPGQCKVFVE SETLGRNLDL SALGSLEELC 600 ARLSSMFGIS NNAELRSHMV YRTISGEVKH IGDEPFSVFV KSARRITIYT DRRDAGSDNT 660 GNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 6e-71 | 32 | 380 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 394 | 400 | PRKKPRT |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G290600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021309253.1 | 0.0 | auxin response factor 10 | ||||
Swissprot | Q01I35 | 0.0 | ARFJ_ORYSI; Auxin response factor 10 | ||||
Swissprot | Q7XKK6 | 0.0 | ARFJ_ORYSJ; Auxin response factor 10 | ||||
TrEMBL | A0A1B6QE14 | 0.0 | A0A1B6QE14_SORBI; Auxin response factor | ||||
STRING | Sb02g032210.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 | Representative plant | OGRP526 | 15 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-144 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G290600.1.p |