PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G275500.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB
Protein Properties Length: 313aa    MW: 34239.1 Da    PI: 5.1012
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G275500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-155198148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT+eEd +l++ +   G  +W+++++  g+ R++k+c++rw +yl
  Sobic.002G275500.3.p 51 RGPWTAEEDRKLINFILTNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 98
                          89******************************99************97 PP
2Myb_DNA-binding47.93.1e-15107148447
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            T  E++  +d++ +lG++ W++Ia++++ gRt++++k++w+++
  Sobic.002G275500.3.p 107 LTDAEEQVVIDLHGKLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 148
                           5899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-204299IPR009057Homeodomain-like
PROSITE profilePS5129413.0854698IPR017930Myb domain
SuperFamilySSF466892.57E-2648145IPR009057Homeodomain-like
SMARTSM007172.3E-1250100IPR001005SANT/Myb domain
PfamPF002494.1E-145198IPR001005SANT/Myb domain
CDDcd001673.14E-95398No hitNo description
PROSITE profilePS5129426.97799153IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-24100154IPR009057Homeodomain-like
SMARTSM007171.5E-13103151IPR001005SANT/Myb domain
PfamPF002497.8E-13107148IPR001005SANT/Myb domain
CDDcd001673.26E-10108149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSISNYRSEE GTAGVQAWLV GWLAGYSKSI SNYRWEEGDG RPCCDKLGVK RGPWTAEEDR  60
KLINFILTNG HCCWRAVPKL AGLLRCGKSC RLRWTNYLRP DLKRGLLTDA EEQVVIDLHG  120
KLGNRWSKIA AKLPGRTDNE IKNHWNTHIK KKLIKMGIDP VTHEPLDRKT SSSPATTSQS  180
AKSDEATKQQ SPENDDVVVM RDVPADGCSP TESSTNTVST GGSSSSSSGG HDQDPLVKWL  240
LEEEPPTGDE PWLNFSGSVD VDEFSSIAAG PELLPWDGAT DWLLDYQDFG LGDSATLVDG  300
YMVNNSSNGA KL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27511537108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.87340.0root| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}.
UniprotTISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}.
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G275500.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417710.0BT041771.1 Zea mays full-length cDNA clone ZM_BFb0051B11 mRNA, complete cds.
GenBankBT0624370.0BT062437.1 Zea mays full-length cDNA clone ZM_BFb0298A24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462722.20.0protein ODORANT1 isoform X1
RefseqXP_021309741.10.0protein ODORANT1 isoform X1
RefseqXP_021309742.10.0protein ODORANT1 isoform X1
RefseqXP_021309743.10.0protein ODORANT1 isoform X1
RefseqXP_021309744.10.0protein ODORANT1 isoform X1
RefseqXP_021309745.10.0protein ODORANT1 isoform X1
RefseqXP_021309746.10.0protein ODORANT1 isoform X1
RefseqXP_021309747.10.0protein ODORANT1 isoform X1
RefseqXP_021309748.10.0protein ODORANT1 isoform X1
RefseqXP_021309749.10.0protein ODORANT1 isoform X1
RefseqXP_021309750.10.0protein ODORANT1 isoform X1
SwissprotQ50EX63e-94ODO1_PETHY; Protein ODORANT1
TrEMBLA0A1B6QDS60.0A0A1B6QDS6_SORBI; Uncharacterized protein
STRINGSb02g030900.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.11e-81myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]