PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G269600.1.p | ||||||||
Common Name | Sb02g030350, SORBIDRAFT_02g030350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 25401.3 Da PI: 8.6803 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.1e-19 | 27 | 77 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d +r r +lg+f+ta+eAa+a+++a+++l+ge Sobic.002G269600.1.p 27 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTADEAARAYDEAARALRGE 77 589******.7*********....4456**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-27 | 27 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.205 | 27 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-14 | 27 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-32 | 27 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-8 | 28 | 39 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-19 | 28 | 85 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.90E-24 | 33 | 85 | No hit | No description |
PRINTS | PR00367 | 8.7E-8 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAAAAAAQDS GRTASATMVT VSRRGRRFVG VRQRPSGRWV AEIKDSAQRV RLWLGTFDTA 60 DEAARAYDEA ARALRGENTR TNFADRAARH GHGGPAGAAR ARLSKNLQHV MARAAAAGRA 120 AACAGVGDQF ALAAVFRHCQ QPAAVAAAQA QAQQQAEPEA VQQVVKHAVK PSFVVPRRTE 180 ATPPSLSSSS VPGGGEVWCV DDDVDAAAEL LCAEEGSFKV SSSVIVPPSF SVSSSESFGL 240 DDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-14 | 27 | 83 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G269600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ810282 | 3e-73 | DQ810282.1 Oryza brachyantha BAC 0002C07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460546.1 | 1e-172 | ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | C5X629 | 1e-171 | C5X629_SORBI; Uncharacterized protein | ||||
STRING | Sb02g030350.1 | 1e-172 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12429 | 26 | 34 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 3e-13 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G269600.1.p |
Entrez Gene | 8054872 |