PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G269100.1.p
Common NameSb02g030310, SORBIDRAFT_02g030310
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 276aa    MW: 28563.9 Da    PI: 6.0242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G269100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-1564114153
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                           + y+GVr++   grWv+e+r+p ++g  +r +lg++  ae Aa+a++aa+++l
  Sobic.002G269100.1.p  64 PVYRGVRRRGAAGRWVCEVRVPGKRG--ARLWLGTYLAAESAARAHDAAMLAL 114
                           68*******************95544..**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-1164114IPR001471AP2/ERF domain
SMARTSM003801.9E-1365132IPR001471AP2/ERF domain
PROSITE profilePS5103220.50865126IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-1465128IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-2465128IPR001471AP2/ERF domain
CDDcd000186.15E-1866128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDMGRLQQHQ HATCSSSTST SASSTSSSEQ TIKAVVWSPS SSSSPQPPKK RPAGRTKFRE  60
TRHPVYRGVR RRGAAGRWVC EVRVPGKRGA RLWLGTYLAA ESAARAHDAA MLALGRGGAA  120
GCLNFPDSAW LLAVPPPSAI SGLDDARRAA LEAVAEFQRR FGAAAAGGCG SVDEATSGVS  180
APPLSTSSLP GISSGSPAPA PELQQVPVKA GETATALDGD VFEPADWFGD MDMELDVYYA  240
SLAEGLLVEP PPAPAAAWDH GDCCDAGADV ALWSY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G269100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8535880.0JN853588.1 Sorghum bicolor genotype B35 dehydration responsive element binding protein 1A (DREB1A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462690.10.0dehydration-responsive element-binding protein 1H
SwissprotA2Z3887e-60DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H
SwissprotQ0J0907e-60DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H
TrEMBLC5X6250.0C5X625_SORBI; Uncharacterized protein
STRINGSb02g030310.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP6456520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.13e-14C-repeat/DRE binding factor 2