PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G268600.1.p

Common Name

Sb02g030260, SORBIDRAFT_02g030260

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

TCP

Protein Properties

Length: 327aa MW: 33537.3 Da PI: 4.9088

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G268600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	100	4.3e-31	68	163	7	102
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa 95 r ++hTkv+gR+RR+R+ a c r+ L++eLG+++d++ti WLlqq++pai+++tgt++ +a +++ ++ + ++ +++ + + Sobic.002G268600.1.p 68 RYRDRHTKVEGRGRRIRMAAACSDRVSRLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIAVTGADGVLRLPAEPAAADGAGGE 156 678********************************************************777775554444444444222221111111 PP TCP 96 kskksqk 102 +++++q+ Sobic.002G268600.1.p 157 QQQQQQE 163 1111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	22.17	69	123	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.5E-24	70	133	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MESRAAGRGE EGTKALYLGN GSAAGAVAVD AMVSMEAGGS GLPKPEPVSV EFLSGGGLQV 60 SNPRPPPRYR DRHTKVEGRG RRIRMAAACS DRVSRLTREL GHKSDGETIR WLLQQSEPAI 120 IAATGTGTVP AIAVTGADGV LRLPAEPAAA DGAGGEQQQQ QQEPDAKRRR KLQPTRGAGA 180 GPGPAAPAPA AAYYPVVADP LLQANGGGAI SVSSGLAPAS APAPVGAIPF IAIPAPSPGA 240 TGERKQMIPP PAAMWMVPQQ AGAANQPTHY WAFPTNPEFL NFQQQAVYDG GQLVGDGESQ 300 GQQTGGYQPW EGEDEEIAVT DSSSEE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269\|PubMed:9338963}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G268600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462687.1	0.0	transcription factor PCF2
Swissprot	A2YXQ1	9e-78	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	9e-78	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	C5X621	0.0	C5X621_SORBI; Uncharacterized protein
STRING	Sb02g030260.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67
Representative plant	OGRP3178	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	3e-33	TCP family protein

Link Out ? help Back to Top
Phytozome	Sobic.002G268600.1.p
Entrez Gene	8059025

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]