PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G257900.1.p
Common NameSb02g029300, SORBIDRAFT_02g029300
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family SBP
Protein Properties Length: 465aa    MW: 48120.6 Da    PI: 7.27
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G257900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.53e-41124200278
                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           C v+gC+adls++++yhrrhkvCe+hsk+pvv+v+g+e rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+q+
  Sobic.002G257900.1.p 124 CAVDGCKADLSKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHLLAEFDEAKRSCRKRLDGHNRRRRKPQP 200
                           **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.3E-36117185IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.342121198IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.76E-39122203IPR004333Transcription factor, SBP-box
PfamPF031103.9E-31124197IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDWDLKMPVS WDLPDLEHDA AMPQPPPIAA TAAAASPAAA SGIAAAATAA PPHAAATRGA  60
PSRAECSVDL KLGGLGEFGA VADGTKEPAA AATATAAPSA PSASPMKRPR SGPGGAAGAQ  120
CPSCAVDGCK ADLSKCRDYH RRHKVCEAHS KTPVVVVAGR EMRFCQQCSR FHLLAEFDEA  180
KRSCRKRLDG HNRRRRKPQP DAMNSGSFMT SQQGLFSSAG TRFSSFPAPR PEPSWSGVIK  240
SEDSSYYTPH PHPVLSNRPH FAGGSTSSAY SKEGRRFPFL QDGDQVSFSA GAGTLEVSTV  300
CQPLLKTAAA AAPPPESSSS NKMFSDGLTP VLDSDCALSL LSSPANSSSV DVSRMVVQPA  360
AEHIPMAQPL VPSSSLQHHH QHHQFGSSPG GWFACSQAGS SAVSGAGTGT GGFACPASVE  420
SEQLNTVLVP SNDAGHEMNY HGIFHVGGEG SSDGTSPSLP FSWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-28112197184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180197KRSCRKRLDGHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.98700.0callus| panicle
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G257900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460490.10.0squamosa promoter-binding-like protein 18 isoform X1
SwissprotQ0J0K11e-152SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLC5X4Q40.0C5X4Q4_SORBI; Uncharacterized protein
STRINGSb02g029300.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.18e-43SBP family protein