PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G253000.1.p | ||||||||
Common Name | Sb02g028870, SORBIDRAFT_02g028870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 377aa MW: 40941.1 Da PI: 9.2823 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.9 | 6.3e-56 | 21 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeel+++yL++k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkd Sobic.002G253000.1.p 21 LPPGFRFHPTDEELITYYLRQKIADGSFTA-RAIAEVDLNKCEPWDLPEKAKLGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKD 108 79*************************999.89***************99999************************************ PP NAM 90 kevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ke+++ + elvg+kktLvfykgrap+gekt+Wvmheyrl Sobic.002G253000.1.p 109 KEIYTGqlpaTPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 151 ****9766666667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-64 | 18 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.989 | 21 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-29 | 22 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MEAGGGGGGG GGESKKKEES LPPGFRFHPT DEELITYYLR QKIADGSFTA RAIAEVDLNK 60 CEPWDLPEKA KLGEKEWYFF SLRDRKYPTG VRTNRATNAG YWKTTGKDKE IYTGQLPATP 120 ELVGMKKTLV FYKGRAPRGE KTNWVMHEYR LHSKSVPKSN KDEWVVCRVF AKSAGAKKYP 180 SNNAHSRSSH HHHPYALDMV PPLLPTLLQH DPFARHHGHH HHHPYMTPAD LAELARFARG 240 TPGLHPHIQP HPGTSAAAAA YMNPAVAAAA PPSFTLSGSG LNLNLGASPA MPSPPQALHA 300 MSMAMGGQTG NHHQVMAGEH QHQHHQQQMA TAAGLGGCVI VPGADGGFGA DAAGGRYQSL 360 DVEQLVERYW PAGYQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-56 | 20 | 178 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-56 | 20 | 178 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-56 | 20 | 178 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-56 | 20 | 178 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-56 | 20 | 178 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-56 | 20 | 178 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-56 | 20 | 178 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-56 | 20 | 178 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-56 | 20 | 178 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-56 | 20 | 178 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-56 | 20 | 178 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-56 | 20 | 178 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-56 | 20 | 178 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-56 | 20 | 178 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G253000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462604.1 | 0.0 | NAC domain-containing protein 100 | ||||
Swissprot | Q9FLJ2 | 4e-85 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | C5X4K1 | 0.0 | C5X4K1_SORBI; Uncharacterized protein | ||||
STRING | Sb02g028870.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9361 | 38 | 46 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 5e-92 | NAC domain containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G253000.1.p |
Entrez Gene | 8054756 |
Publications ? help Back to Top | |||
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