PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G251700.1.p
Common NameSb02g028750, SORBIDRAFT_02g028750
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 710aa    MW: 77598.1 Da    PI: 4.3689
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G251700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.84.6e-45101352128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                           ppGfrF+Ptdeelv ++Lk+++ + + +    +++v++yk++P++Lp+  ++++++++w+fFs+ d+ky++g+r++r+t +gyWkatgk
  Sobic.002G251700.1.p  10 PPGFRFSPTDEELVLYFLKRRIVSGRPSP--YVADVEVYKSHPSHLPErsALQTGDRQWFFFSRMDRKYPNGSRASRTTGDGYWKATGK 96 
                           8********************88888555..69*************94357888999******************************** PP

                   NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           d+ ++  +g++vg kktLv+++grap+ge+tdWvmhey+l
  Sobic.002G251700.1.p  97 DRFICG-GGRAVGNKKTLVYHHGRAPRGERTDWVMHEYTL 135
                           *****9.99*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-527158IPR003441NAC domain
PROSITE profilePS5100551.1239158IPR003441NAC domain
PfamPF023657.8E-2410135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
METPPPRRWP PGFRFSPTDE ELVLYFLKRR IVSGRPSPYV ADVEVYKSHP SHLPERSALQ  60
TGDRQWFFFS RMDRKYPNGS RASRTTGDGY WKATGKDRFI CGGGRAVGNK KTLVYHHGRA  120
PRGERTDWVM HEYTLLADAL PPAAQGRESY ALYKLFQKSG AGPKNGEQYG APFREEDWLD  180
DDDEGVTADA AANSVPNTNN PPCTVEEHAI TDRELPIEDL DELLSNFGND QEFSEAQPTS  240
SHGQGQGWLS EGGDKAEVVD ASISNGAVVV AENTCTDLPL GDIEQLLMQI SDDQQNAELF  300
SDLSTSVPEL QFQCEDRQAW HDADGGHEVC AGDPTASSGA VVTAECIDTE LPLGDLEGLL  360
LQIANDQDMV EPQSDLSAPI PHHNFNQAGI GDLHESHGAP VGNLSCIVQE SAFCEPRTEP  420
SSQFPQSNVT NLPFSGETNS SEGTSVAHSV SGLISYHSQD ADEEFLEIND FFDLDDVGQN  480
ADCTTTEYLI SATNGMFDNL EYCDAPSFLP GPFDTVGLVA ENQFFDIGNS GIQNQRYQYT  540
TEVRTHNQAA LNVRSHMKHD HVVLSSHASA GTMNIHAANE VNNQSSTASQ SWFNAALSAL  600
LDSVPSSPAL AAEIENTVIN RTLQRISSFR SQQTAGEENT FINRTLQHIS SFKSQQATRE  660
EPGTPSIQVT RGSRLMLISL LVILASIIWT FTSGSALNFC KGFWKSSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-431013516140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.16930.0embryo
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G251700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0336690.0BT033669.1 Zea mays full-length cDNA clone ZM_BFc0115C07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310063.10.0NAC domain-containing protein 82 isoform X1
TrEMBLA0A1B6QDD70.0A0A1B6QDD7_SORBI; Uncharacterized protein
STRINGSb02g028750.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Representative plantOGRP1703733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.19e-71NAC domain containing protein 17