PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G247800.1.p | ||||||||
Common Name | Sb02g028420, SORBIDRAFT_02g028420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | SBP | ||||||||
Protein Properties | Length: 389aa MW: 40724.1 Da PI: 8.7033 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.5 | 2.8e-41 | 71 | 146 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gC +dls +k+y+ rhkvC +hsk p v+v+g+eqrfCqqCsrfh+l efD++krsCrrrL +hnerrrk+ Sobic.002G247800.1.p 71 RCQVDGCGVDLSAVKQYYCRHKVCYMHSKEPRVVVAGIEQRFCQQCSRFHQLPEFDQGKRSCRRRLIGHNERRRKP 146 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-33 | 66 | 133 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.735 | 69 | 146 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.26E-39 | 70 | 150 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.7E-32 | 72 | 145 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MATGGSGSDD VHGLTFGKKI YFEQDAAVAA AGGSGSGSAT AAAGGRKGKG VATGGGRPAS 60 ASAASATQPP RCQVDGCGVD LSAVKQYYCR HKVCYMHSKE PRVVVAGIEQ RFCQQCSRFH 120 QLPEFDQGKR SCRRRLIGHN ERRRKPPPGP LTSRYGRLAA SFQEPGRFRS FLLDFSYPRV 180 PSSVRDAWQG VQPGGDRMLG TIQWHGNQEP HPHRSAAAGY GNHAYNCHGG LVAGASMLPS 240 AFELPPGGCV AGVTTDSSCA LSLLSTQPWD TTPQSGSHNR SPAMSAAASA FEGTPVAPSV 300 MASSYTASST WTASRDPADG ARNAQQHHDD ALHLVHPGPV HHGHFSGELE LALQGSGPPP 360 PPNMPHVDHG SSSGTFSHST TNAMNWSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-28 | 72 | 145 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.13311 | 3e-50 | embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00412 | DAP | Transfer from AT3G57920 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G247800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041777 | 0.0 | BT041777.2 Zea mays full-length cDNA clone ZM_BFb0053F21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462571.1 | 0.0 | squamosa promoter-binding-like protein 17 | ||||
Swissprot | A3C057 | 1e-158 | SPL17_ORYSJ; Squamosa promoter-binding-like protein 17 | ||||
TrEMBL | C5X3X7 | 0.0 | C5X3X7_SORBI; Uncharacterized protein | ||||
STRING | Sb02g028420.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 7e-44 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G247800.1.p |
Entrez Gene | 8064852 |