PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G246600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 445aa MW: 46238.8 Da PI: 8.3777 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 7.9e-13 | 363 | 408 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ k + a++L +Av+YIk+Lq Sobic.002G246600.1.p 363 SIAERVRRTKISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 408 689*********************7....467*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.212 | 357 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-16 | 360 | 419 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.85E-13 | 361 | 412 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.2E-15 | 362 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.3E-10 | 363 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-13 | 363 | 413 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MYGAPVPKDL NLPAAALPQP TTRAGARTPP HQQQQMSSPG LLRYRSAPST LLGEVMCGDQ 60 DFPAAAAAAG GAGAGHGPPP DHAAAADNVL ARFLAGHHHC SEARDCKPPR PAASAHHFMD 120 EAAAAAASMA ASQQQQLMYQ SSQQQMAAME GLYRNVSSGG TEHGAAVGGA GNNSLIRQSS 180 SPAGFLSHLN MDNGYGSMLR AGMAGGGFRT NGAVSDARLK GQLSFSSRQG SVMSQISEVG 240 SEELDGGSSP ETAAGSNGSG APRGYSGIPG YTMGVSPGAW TDEPSPSPTS GAKRPRDFAG 300 PVPQNVHQQP LAPQLSLPSG NNGGGKPAAA SAEMAAIEKF LQFQDAVPCK IRAKRGCATH 360 PRSIAERVRR TKISERIRKL QELVPNMEKQ TNTADMLDLA VDYIKDLQKQ VKELECTIQL 420 SGRPEPSEML PSSRFALWLT AGVT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.15489 | 0.0 | callus| embryo| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G246600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969962 | 0.0 | EU969962.1 Zea mays clone 337883 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310648.1 | 0.0 | transcription factor bHLH130-like | ||||
TrEMBL | A0A1B6QDB3 | 0.0 | A0A1B6QDB3_SORBI; Uncharacterized protein | ||||
STRING | Sb02g028300.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1884 | 38 | 103 | Representative plant | OGRP511 | 15 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 2e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G246600.1.p |