PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G245500.1.p | ||||||||
Common Name | Sb02g028220, SORBIDRAFT_02g028220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 452aa MW: 48804.1 Da PI: 6.1161 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.2e-05 | 276 | 295 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Sobic.002G245500.1.p 276 FSCPVCFKTFNRYNNMQMHM 295 89*****************9 PP | |||||||
2 | zf-C2H2 | 10.9 | 0.0015 | 362 | 382 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F k + ++H +++ Sobic.002G245500.1.p 362 CRRCGKAFAVKGDWRTHEKNC 382 *****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.8E-6 | 276 | 295 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.64 | 276 | 303 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 278 | 298 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.91E-6 | 342 | 380 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.4E-5 | 347 | 380 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.538 | 360 | 380 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MENPYTSFIN SHPSQHHHHR YYYHPAAPPA PAPTAYPSLL PFFAAHHQPP PAPAPTPPSP 60 PLREALPLLS LAPAPPPPRG IGITRQQDEK RRGRRAPALD SEEDKDEGDE EEEEDEGPTE 120 SGGNHGQQKR LGQGALFADL NAKAAGDDPM DVEVEEAADG SGSGSAVGDV TVALRIGLPL 180 PLPPAPTTTS TGAADLQVSD LPAAGARRQQ HNHDDGGEEE DDDRENGGGE EEEEEEETTA 240 VAAPLGFPST PIIGRLNMGQ YWIPTPSQIL IGPTQFSCPV CFKTFNRYNN MQMHMWGHGS 300 QYRKGPESLR GIQPTAMLRL PCYCCSPGCR NNIDHPRAKP LKDFRTLQTH YKRKHGLKPF 360 LCRRCGKAFA VKGDWRTHEK NCGRLWYCLC GSEFKHKRSL KDHARAFGHG HGFVVGAGAG 420 AGCGGGLDDD DDGAVSDVDQ HDGATAASRS M* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G245500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969661 | 0.0 | EU969661.1 Zea mays clone 333696 zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460444.1 | 0.0 | zinc finger protein WIP2 | ||||
Swissprot | Q9SVY1 | 1e-118 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | C5X3V5 | 0.0 | C5X3V5_SORBI; Uncharacterized protein | ||||
STRING | Sb02g028220.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP586 | 38 | 170 | Representative plant | OGRP410 | 15 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-108 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G245500.1.p |
Entrez Gene | 8055865 |
Publications ? help Back to Top | |||
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