PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G225700.1.p
Common NameSb02g026630, SORBIDRAFT_02g026630
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 295aa    MW: 31022.7 Da    PI: 5.6636
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G225700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-20145193355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+W+AeIrdp+    r +r++lg+f+taeeAa+a++ a+ +++g
  Sobic.002G225700.1.p 145 YRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFDTAEEAARAYDCAAIEFRG 193
                           9*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.1E-35144207IPR001471AP2/ERF domain
PROSITE profilePS5103225.567144201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-32144201IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23144201IPR016177DNA-binding domain
CDDcd000183.45E-32145201No hitNo description
PfamPF008471.0E-14145193IPR001471AP2/ERF domain
PRINTSPR003672.0E-12145156IPR001471AP2/ERF domain
PRINTSPR003672.0E-12167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MTKKLISAMA GKQGFKEQQF NDQRRQQASI QGDDIAKSLV GFGGGGGRLI SHEQEDAIIV  60
AALRHVVSGY STPPPEVVTV AGGEPCGVCG IDGCLGCDFF GAAPELTQQE AVNFGTGQMV  120
ATAAAAAAGG EHGQRTRRRR KKNMYRGVRQ RPWGKWAAEI RDPRRAARVW LGTFDTAEEA  180
ARAYDCAAIE FRGARAKLNF PGHEALLPFQ GHGHGGDACA TAAANAETQT TPMLMTPSPC  240
SADAAAAAPG DWQLGGGVDG GEGDEVWEGL LQDLMKQDEA DLWFLPFSGA ASSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21141201263ATERF1
3gcc_A2e-21141201263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G225700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9644532e-71EU964453.1 Zea mays clone 278992 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460334.10.0ethylene-responsive transcription factor ERF109
SwissprotQ9SZ062e-32EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLC5X2B40.0C5X2B4_SORBI; Uncharacterized protein
STRINGSb02g026630.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-25redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]